|
ZNF740_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ZNF740 |
1 |
589 |
995 |
382 |
185 |
|
TF group |
C2H2 |
2 |
196 |
2151 |
27 |
145 |
|
Polypeptide used |
DBD |
3 |
146 |
2151 |
7 |
49 |
|
Ligand sequence |
TGGTCT20NCTT |
4 |
21 |
2151 |
8 |
34 |
|
Batch of SELEX experiment |
Y |
5 |
20 |
2151 |
12 |
33 |
|
Seed sequence |
NCCCCCCCAC |
6 |
8 |
2151 |
21 |
30 |
|
Hamming distance of sequences to seed |
1 |
7 |
53 |
2151 |
38 |
23 |
|
SELEX cycle |
4 |
8 |
108 |
2151 |
23 |
104 |
|
Number of repeats |
monomeric |
9 |
2151 |
587 |
114 |
310 |
|
Comment |
|
10 |
433 |
2151 |
184 |
708 |
|
Representative matrix |
no |
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
ZNF740_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
ZNF740 |
1 |
1077 |
3104 |
873 |
384 |
|
TF group |
C2H2 |
2 |
130 |
5438 |
20 |
78 |
|
Polypeptide used |
full |
3 |
64 |
5438 |
59 |
93 |
|
Ligand sequence |
TGTGAG20NGA |
4 |
78 |
5438 |
61 |
65 |
|
Batch of SELEX experiment |
AE |
5 |
308 |
5438 |
175 |
185 |
|
Seed sequence |
NCCCCCCCAC |
6 |
34 |
5438 |
42 |
33 |
|
Hamming distance of sequences to seed |
1 |
7 |
50 |
5438 |
8 |
65 |
|
SELEX cycle |
4 |
8 |
96 |
5438 |
71 |
328 |
|
Number of repeats |
monomeric |
9 |
5438 |
526 |
530 |
991 |
|
Comment |
|
10 |
603 |
5438 |
269 |
1710 |
|
Representative
matrix |
no |
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Znf740_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Zfp740 |
1 |
806 |
909 |
590 |
354 |
|
TF group |
C2H2 |
2 |
699 |
2659 |
105 |
297 |
|
Polypeptide used |
DBD |
3 |
582 |
2659 |
23 |
166 |
|
Ligand sequence |
TCAACC20NCG |
4 |
136 |
2659 |
24 |
74 |
|
Batch of SELEX experiment |
Z |
5 |
110 |
2659 |
8 |
91 |
|
Seed sequence |
NCCCCCCCAC |
6 |
190 |
2659 |
41 |
144 |
|
Hamming distance of sequences to seed |
1 |
7 |
235 |
2659 |
120 |
139 |
|
SELEX cycle |
3 |
8 |
390 |
2659 |
107 |
280 |
|
Number of repeats |
monomeric |
9 |
2659 |
416 |
277 |
611 |
|
Comment |
|
10 |
811 |
2659 |
352 |
1162 |
|
Representative
matrix |
yes |
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |