|
|
ZNF238_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ZNF238 |
|
1 |
286 |
184 |
141 |
141 |
|
TF group |
C2H2 |
|
2 |
403 |
43 |
77 |
229 |
|
Polypeptide used |
DBD |
|
3 |
41 |
72 |
200 |
752 |
|
Ligand sequence |
TGGTGA20NGA |
|
4 |
128 |
752 |
60 |
4 |
|
Batch of SELEX experiment |
AC |
|
5 |
6 |
752 |
3 |
0 |
|
Seed sequence |
NNTCCAGATGTKN |
|
6 |
752 |
0 |
0 |
0 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1 |
11 |
752 |
0 |
|
SELEX cycle |
3 |
|
8 |
752 |
36 |
6 |
3 |
|
Number of repeats |
monomeric |
|
9 |
0 |
0 |
1 |
752 |
|
Comment |
|
|
10 |
0 |
0 |
752 |
1 |
|
Representative matrix |
yes |
|
11 |
0 |
11 |
0 |
752 |
|
|
|
|
12 |
4 |
1 |
313 |
438 |
|
Source: |
|
|
13 |
93 |
194 |
235 |
229 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
ZNF238_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ZNF238 |
|
1 |
3561 |
4188 |
2499 |
3423 |
|
TF group |
C2H2 |
|
2 |
7064 |
753 |
2535 |
3319 |
|
Polypeptide used |
full |
|
3 |
1177 |
1937 |
5212 |
13670 |
|
Ligand sequence |
TAGTAA20NATT |
|
4 |
3618 |
13670 |
1899 |
60 |
|
Batch of SELEX experiment |
W |
|
5 |
21 |
13670 |
3 |
8 |
|
Seed sequence |
NNTCCAGATGTKN |
|
6 |
13670 |
5 |
33 |
206 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
3 |
245 |
13670 |
6 |
|
SELEX cycle |
3 |
|
8 |
13670 |
1048 |
278 |
297 |
|
Number of repeats |
monomeric |
|
9 |
14 |
15 |
94 |
13670 |
|
Comment |
|
|
10 |
3 |
1 |
13670 |
1 |
|
Representative
matrix |
no |
|
11 |
48 |
314 |
36 |
13670 |
|
|
|
|
12 |
210 |
177 |
5530 |
8140 |
|
Source: |
|
|
13 |
1725 |
4042 |
3876 |
4027 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|