|
|
ZIC4 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ZIC4 |
|
1 |
578 |
934 |
4126 |
1887 |
|
TF group |
C2H2 |
|
2 |
3013 |
812 |
1553 |
21 |
|
Polypeptide used |
DBD |
|
3 |
315 |
2870 |
52 |
98 |
|
Ligand sequence |
TGAGGC20NGA |
|
4 |
209 |
2890 |
121 |
147 |
|
Batch of SELEX experiment |
AC |
|
5 |
614 |
2757 |
225 |
275 |
|
Seed sequence |
GACCCCCYGYTGNGN |
|
6 |
8 |
2999 |
0 |
1 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
114 |
2985 |
0 |
11 |
|
SELEX cycle |
3 |
|
8 |
24 |
2222 |
6 |
1078 |
|
Number of repeats |
monomeric |
|
9 |
1095 |
68 |
4795 |
69 |
|
Comment |
|
|
10 |
24 |
2279 |
252 |
1017 |
|
Representative
matrix |
no |
|
11 |
1052 |
865 |
1903 |
3488 |
|
|
|
|
12 |
258 |
18 |
5086 |
67 |
|
|
|
|
13 |
704 |
1044 |
599 |
1454 |
|
Source: |
|
|
14 |
74 |
452 |
4522 |
1156 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
1083 |
1224 |
363 |
916 |
|
|
|