|
|
ZIC3_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ZIC3 |
|
1 |
20 |
50 |
163 |
69 |
|
TF group |
C2H2 |
|
2 |
163 |
32 |
43 |
0 |
|
Polypeptide used |
full |
|
3 |
7 |
203 |
0 |
4 |
|
Ligand sequence |
TCACGT20NGCA |
|
4 |
7 |
204 |
3 |
7 |
|
Batch of SELEX experiment |
AE |
|
5 |
22 |
188 |
0 |
19 |
|
Seed sequence |
GACCCCCYGYTGNGN |
|
6 |
0 |
209 |
0 |
0 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
0 |
206 |
0 |
0 |
|
SELEX cycle |
3 |
|
8 |
0 |
142 |
0 |
61 |
|
Number of repeats |
monomeric |
|
9 |
22 |
5 |
217 |
2 |
|
Comment |
|
|
10 |
4 |
178 |
6 |
29 |
|
Representative matrix |
no |
|
11 |
18 |
26 |
53 |
163 |
|
|
|
|
12 |
3 |
0 |
225 |
3 |
|
|
|
|
13 |
24 |
89 |
13 |
74 |
|
Source: |
|
|
14 |
3 |
2 |
214 |
23 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
56 |
79 |
13 |
53 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Zic3_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Zic3 |
|
1 |
2200 |
4808 |
28519 |
11567 |
|
TF group |
C2H2 |
|
2 |
27285 |
4978 |
10488 |
78 |
|
Polypeptide used |
DBD |
|
3 |
1296 |
37754 |
58 |
273 |
|
Ligand sequence |
TCAAAA20NAAA |
|
4 |
1479 |
37901 |
362 |
351 |
|
Batch of SELEX experiment |
AF |
|
5 |
2515 |
34601 |
279 |
1079 |
|
Seed sequence |
GACCMCCYRMTGNGN |
|
6 |
4 |
38635 |
0 |
4 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
220 |
38743 |
2 |
8 |
|
SELEX cycle |
3 |
|
8 |
25 |
25195 |
7 |
13234 |
|
Number of repeats |
monomeric |
|
9 |
2659 |
85 |
37346 |
33 |
|
Comment |
|
|
10 |
22 |
37283 |
662 |
6918 |
|
Representative
matrix |
no |
|
11 |
2030 |
2118 |
6056 |
34240 |
|
|
|
|
12 |
142 |
9 |
39958 |
31 |
|
|
|
|
13 |
3954 |
10442 |
3630 |
19188 |
|
Source: |
|
|
14 |
23 |
787 |
37239 |
3580 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
11330 |
15346 |
1541 |
8128 |
|
|
|