|
|
YY2_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
YY2 |
|
1 |
137 |
90 |
239 |
93 |
|
TF group |
C2H2 |
|
2 |
198 |
71 |
90 |
200 |
|
Polypeptide used |
DBD |
|
3 |
53 |
559 |
41 |
181 |
|
Ligand sequence |
TCTTTC20NTTG |
|
4 |
9 |
559 |
21 |
14 |
|
Batch of SELEX experiment |
Y |
|
5 |
20 |
36 |
559 |
17 |
|
Seed sequence |
NNCCGCCATNW |
|
6 |
12 |
559 |
1 |
0 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
0 |
559 |
0 |
5 |
|
SELEX cycle |
4 |
|
8 |
559 |
7 |
9 |
23 |
|
Number of repeats |
monomeric |
|
9 |
9 |
0 |
0 |
559 |
|
Comment |
|
|
10 |
70 |
84 |
68 |
338 |
|
Representative matrix |
yes |
|
11 |
338 |
32 |
114 |
221 |
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
YY2_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
YY2 |
|
1 |
412 |
347 |
333 |
321 |
|
TF group |
C2H2 |
|
2 |
271 |
1413 |
129 |
171 |
|
Polypeptide used |
full |
|
3 |
167 |
1413 |
189 |
124 |
|
Ligand sequence |
TGAGCA20NGA |
|
4 |
307 |
80 |
1413 |
239 |
|
Batch of SELEX experiment |
AE |
|
5 |
64 |
1413 |
50 |
14 |
|
Seed sequence |
NCCGCCATNNT |
|
6 |
6 |
1413 |
3 |
3 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1413 |
23 |
21 |
0 |
|
SELEX cycle |
2 |
|
8 |
0 |
74 |
0 |
1413 |
|
Number of repeats |
monomeric |
|
9 |
254 |
387 |
299 |
472 |
|
Comment |
|
|
10 |
346 |
211 |
144 |
712 |
|
Representative
matrix |
no |
|
11 |
493 |
927 |
226 |
1413 |
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|