|
|
XBP1_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
XBP1 |
|
1 |
97 |
84 |
728 |
93 |
|
TF group |
bZIP |
|
2 |
445 |
127 |
140 |
2 |
|
Polypeptide used |
DBD |
|
3 |
57 |
38 |
12 |
694 |
|
Ligand sequence |
TGTTCA20NGA |
|
4 |
3 |
80 |
912 |
48 |
|
Batch of SELEX experiment |
AC |
|
5 |
534 |
0 |
2 |
4 |
|
Seed sequence |
GATGACGTCATC |
|
6 |
0 |
418 |
2 |
0 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
0 |
2 |
925 |
1 |
|
SELEX cycle |
3 |
|
8 |
1 |
0 |
1 |
685 |
|
Number of repeats |
dimeric |
|
9 |
51 |
411 |
48 |
2 |
|
Comment |
|
|
10 |
538 |
0 |
26 |
36 |
|
Representative matrix |
no |
|
11 |
12 |
170 |
191 |
539 |
|
Source: |
|
|
12 |
67 |
372 |
135 |
114 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
XBP1_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
XBP1 |
|
1 |
4396 |
558 |
801 |
2467 |
|
TF group |
bZIP |
|
2 |
3270 |
1017 |
2413 |
1780 |
|
Polypeptide used |
DBD |
|
3 |
1104 |
1191 |
2669 |
3999 |
|
Ligand sequence |
TGTTCA20NGA |
|
4 |
974 |
367 |
9168 |
2321 |
|
Batch of SELEX experiment |
AC |
|
5 |
3699 |
3809 |
59 |
247 |
|
Seed sequence |
NNNGMCACGTCATC |
|
6 |
167 |
7169 |
222 |
442 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
7840 |
17 |
276 |
118 |
|
SELEX cycle |
3 |
|
8 |
9 |
7356 |
2 |
10 |
|
Number of repeats |
dimeric |
|
9 |
52 |
0 |
11353 |
10 |
|
Comment |
|
|
10 |
0 |
16 |
8 |
9107 |
|
Representative
matrix |
no |
|
11 |
380 |
7264 |
47 |
35 |
|
|
|
|
12 |
8004 |
48 |
173 |
92 |
|
Source: |
|
|
13 |
230 |
2273 |
3157 |
6389 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
989 |
6313 |
1217 |
1250 |
|
|
|