VSX1_1

 

 

 

 

A

C

G

T

 

Name

VSX1

1

756

8453

561

5119

 

TF group

homeodomain

2

1836

3131

572

13572

 

Polypeptide used

DBD

3

13572

626

553

554

 

Ligand sequence

TGGTTC20NTTT

4

13572

154

172

90

 

Batch of SELEX experiment

Z

5

172

199

103

13572

 

Seed sequence

YTAATTAN

6

898

761

984

13572

 

Hamming distance of sequences to seed

1

7

13572

516

3337

1372

 

SELEX cycle

2

8

2626

3555

3658

3732

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

VSX1_2

 

 

 

 

A

C

G

T

 

Name

VSX1

1

2215

1033

2220

1479

 

TF group

homeodomain

2

953

1042

4207

746

 

Polypeptide used

full

3

853

5164

1084

1784

 

Ligand sequence

TCGGGG20NGGT

4

864

6490

531

6947

 

Batch of SELEX experiment

AE

5

6947

1399

531

922

 

Seed sequence

NNYTAATTANN

6

6947

305

382

209

 

Hamming distance of sequences to seed

1

7

94

383

184

6947

 

SELEX cycle

3

8

1028

1039

1095

6947

 

Number of repeats

monomeric

9

6947

476

4337

1269

 

Comment

 

10

1844

1224

2577

1302

 

Representative matrix

no

11

1291

2810

1313

1533

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Vsx1_3

 

 

 

 

A

C

G

T

 

Name

Vsx1

1

1772

4996

2152

3109

 

TF group

homeodomain

2

1094

6246

626

5782

 

Polypeptide used

DBD

3

12029

1424

1053

1041

 

Ligand sequence

TGCAGA20NCG

4

12029

825

309

361

 

Batch of SELEX experiment

P

5

134

101

31

12029

 

Seed sequence

NYAATTAN

6

559

1014

506

12029

 

Hamming distance of sequences to seed

1

7

12029

464

217

987

 

SELEX cycle

2

8

3847

2961

3109

2112

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764