|
|
VDR_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
VDR |
|
1 |
5712 |
1471 |
23911 |
173 |
|
TF group |
nuclearreceptor |
|
2 |
20648 |
11 |
12584 |
1 |
|
Polypeptide used |
full |
|
3 |
8 |
5 |
28323 |
11 |
|
Ligand sequence |
TATTGT20NCG |
|
4 |
5 |
13 |
3866 |
29506 |
|
Batch of SELEX experiment |
AC |
|
5 |
267 |
455 |
919 |
30107 |
|
Seed sequence |
GRGTTCANNRRGTTCA |
|
6 |
43 |
46948 |
62 |
884 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
35680 |
130 |
3649 |
210 |
|
SELEX cycle |
3 |
|
8 |
3643 |
8775 |
1638 |
19613 |
|
Number of repeats |
dimeric |
|
9 |
6013 |
12672 |
2619 |
13845 |
|
Comment |
|
|
10 |
5903 |
2186 |
22959 |
464 |
|
Representative matrix |
no |
|
11 |
20690 |
14 |
12607 |
3 |
|
|
|
|
12 |
6 |
2 |
28372 |
5 |
|
|
|
|
13 |
2 |
7 |
2512 |
29193 |
|
|
|
|
14 |
263 |
391 |
1241 |
28965 |
|
Source: |
|
|
15 |
7 |
45781 |
73 |
1671 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
16 |
37729 |
137 |
4040 |
149 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Vdr_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Vdr |
|
1 |
99 |
32 |
260 |
2 |
|
TF group |
nuclearreceptor |
|
2 |
225 |
0 |
166 |
0 |
|
Polypeptide used |
DBD |
|
3 |
0 |
2 |
415 |
0 |
|
Ligand sequence |
TCCGCA20NCG |
|
4 |
1 |
2 |
66 |
368 |
|
Batch of SELEX experiment |
Z |
|
5 |
3 |
2 |
10 |
400 |
|
Seed sequence |
RRGTTCANNRRGTTCA |
|
6 |
0 |
520 |
3 |
15 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
354 |
0 |
68 |
12 |
|
SELEX cycle |
3 |
|
8 |
21 |
154 |
14 |
256 |
|
Number of repeats |
dimeric |
|
9 |
105 |
183 |
20 |
101 |
|
Comment |
|
|
10 |
46 |
30 |
372 |
2 |
|
Representative matrix |
yes |
|
11 |
145 |
0 |
301 |
0 |
|
|
|
|
12 |
0 |
0 |
420 |
1 |
|
|
|
|
13 |
0 |
0 |
38 |
366 |
|
|
|
|
14 |
1 |
2 |
6 |
390 |
|
Source: |
|
|
15 |
0 |
500 |
6 |
23 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
16 |
420 |
4 |
38 |
7 |
|
|
|