|
|
UNCX_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
UNCX |
|
1 |
833 |
1165 |
974 |
1048 |
|
TF group |
homeodomain |
|
2 |
1065 |
668 |
433 |
4020 |
|
Polypeptide used |
DBD |
|
3 |
4020 |
395 |
1364 |
1006 |
|
Ligand sequence |
TGCAAG20NGA |
|
4 |
4020 |
48 |
132 |
62 |
|
Batch of SELEX experiment |
AF |
|
5 |
814 |
1061 |
805 |
4020 |
|
Seed sequence |
NTAATYTAATTAN |
|
6 |
480 |
1549 |
1108 |
2471 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
655 |
2322 |
2042 |
4020 |
|
SELEX cycle |
2 |
|
8 |
4020 |
871 |
600 |
381 |
|
Number of repeats |
dimeric |
|
9 |
4020 |
181 |
134 |
101 |
|
Comment |
|
|
10 |
7 |
62 |
9 |
4020 |
|
Representative matrix |
no |
|
11 |
893 |
883 |
207 |
4020 |
|
|
|
|
12 |
4020 |
304 |
937 |
1150 |
|
Source: |
|
|
13 |
1024 |
1001 |
1123 |
873 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
UNCX_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
UNCX |
|
1 |
4980 |
13363 |
5711 |
12871 |
|
TF group |
homeodomain |
|
2 |
3975 |
16800 |
2086 |
20126 |
|
Polypeptide used |
DBD |
|
3 |
36926 |
2540 |
4582 |
2629 |
|
Ligand sequence |
TGCAAG20NGA |
|
4 |
36926 |
1302 |
420 |
890 |
|
Batch of SELEX experiment |
AF |
|
5 |
481 |
806 |
117 |
36926 |
|
Seed sequence |
NYAATTAN |
|
6 |
3111 |
3958 |
1782 |
36926 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
36926 |
2211 |
731 |
3885 |
|
SELEX cycle |
2 |
|
8 |
13811 |
7825 |
10480 |
4810 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
Uncx_d2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Uncx |
|
1 |
497 |
678 |
600 |
709 |
|
TF group |
homeodomain |
|
2 |
342 |
192 |
149 |
2485 |
|
Polypeptide used |
DBD |
|
3 |
2485 |
85 |
517 |
330 |
|
Ligand sequence |
TGGAGC20NCG |
|
4 |
2485 |
11 |
21 |
7 |
|
Batch of SELEX experiment |
P |
|
5 |
232 |
357 |
236 |
2485 |
|
Seed sequence |
NTAATYTAATTAN |
|
6 |
128 |
814 |
376 |
1670 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
245 |
1069 |
973 |
2485 |
|
SELEX cycle |
2 |
|
8 |
2485 |
257 |
157 |
86 |
|
Number of repeats |
dimeric |
|
9 |
2485 |
36 |
38 |
14 |
|
Comment |
|
|
10 |
7 |
4 |
3 |
2485 |
|
Representative matrix |
no |
|
11 |
271 |
253 |
34 |
2485 |
|
|
|
|
12 |
2485 |
92 |
288 |
368 |
|
Source: |
|
|
13 |
654 |
510 |
797 |
524 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
Uncx_m2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Uncx |
|
1 |
214 |
3077 |
180 |
2517 |
|
TF group |
homeodomain |
|
2 |
920 |
1311 |
1116 |
5594 |
|
Polypeptide used |
DBD |
|
3 |
5594 |
280 |
303 |
154 |
|
Ligand sequence |
TGGAGC20NCG |
|
4 |
5594 |
31 |
35 |
21 |
|
Batch of SELEX experiment |
P |
|
5 |
95 |
63 |
11 |
5594 |
|
Seed sequence |
YTAATTAN |
|
6 |
328 |
524 |
252 |
5594 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
5594 |
638 |
1266 |
463 |
|
SELEX cycle |
2 |
|
8 |
1892 |
1432 |
1191 |
1080 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|