|
Tp53_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Tp53 |
1 |
4990 |
29 |
814 |
339 |
|
TF group |
p53l |
2 |
1 |
8241 |
1 |
6 |
|
Polypeptide used |
DBD |
3 |
4890 |
1 |
17 |
12 |
|
Ligand sequence |
TCGGGG20NGGT |
4 |
2665 |
6 |
1205 |
3371 |
|
Batch of SELEX experiment |
AK |
5 |
21 |
0 |
8142 |
60 |
|
Seed sequence |
ACAWGTCNNNNRACAWGT |
6 |
352 |
1545 |
78 |
7929 |
|
Hamming distance of sequences to seed |
2 |
7 |
926 |
5259 |
1866 |
966 |
|
SELEX cycle |
4 |
8 |
1697 |
2476 |
862 |
2122 |
|
Number of repeats |
dimeric |
9 |
2606 |
528 |
2344 |
1301 |
|
Comment |
|
10 |
1928 |
419 |
2189 |
2578 |
|
Representative matrix |
yes |
11 |
1837 |
898 |
2361 |
2009 |
|
|
|
12 |
2747 |
97 |
3685 |
509 |
|
|
|
13 |
5312 |
20 |
1777 |
537 |
|
|
|
14 |
7 |
7913 |
7 |
74 |
|
|
|
15 |
5436 |
12 |
21 |
65 |
|
|
|
16 |
2517 |
8 |
950 |
3598 |
|
Source: |
|
17 |
28 |
187 |
8776 |
8 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
377 |
679 |
90 |
7725 |
|
|
|
|
|
|
|
|
|
|
|
|
Tp53_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Tp53 |
1 |
7761 |
7 |
804 |
213 |
|
TF group |
p53l |
2 |
0 |
13200 |
0 |
8 |
|
Polypeptide used |
DBD |
3 |
7918 |
48 |
62 |
4 |
|
Ligand sequence |
TCGGGG20NGGT |
4 |
4585 |
60 |
438 |
5255 |
|
Batch of SELEX experiment |
AK |
5 |
33 |
24 |
12932 |
216 |
|
Seed sequence |
ACAWGTCNNNRRCAWGT |
6 |
129 |
1542 |
28 |
11821 |
|
Hamming distance of sequences to seed |
2 |
7 |
514 |
11025 |
772 |
1435 |
|
SELEX cycle |
4 |
8 |
2714 |
2143 |
2095 |
4388 |
|
Number of repeats |
dimeric |
9 |
4192 |
1871 |
2988 |
1653 |
|
Comment |
|
10 |
3467 |
1228 |
2932 |
3586 |
|
Representative matrix |
yes |
11 |
2888 |
85 |
8363 |
1190 |
|
|
|
12 |
7486 |
25 |
1394 |
132 |
|
|
|
13 |
23 |
12857 |
0 |
5 |
|
|
|
14 |
8666 |
23 |
71 |
41 |
|
|
|
15 |
2682 |
157 |
1283 |
7505 |
|
Source: |
|
16 |
28 |
125 |
13534 |
110 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
371 |
972 |
70 |
11850 |
|
|
|
|
|
|
|
|
|
|
|
|
Tp53_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Tp53 |
1 |
7544 |
1037 |
6563 |
2268 |
|
TF group |
p53l |
2 |
10514 |
116 |
2433 |
735 |
|
Polypeptide used |
DBD |
3 |
45 |
19689 |
13 |
837 |
|
Ligand sequence |
TCGGGG20NGGT |
4 |
11931 |
204 |
653 |
739 |
|
Batch of SELEX experiment |
AK |
5 |
1710 |
374 |
137 |
18893 |
|
Seed sequence |
RACATGYCNNGRCATGTY |
6 |
8 |
2 |
20393 |
0 |
|
Hamming distance of sequences to seed |
2 |
7 |
244 |
12014 |
109 |
7106 |
|
SELEX cycle |
4 |
8 |
1228 |
17286 |
417 |
2642 |
|
Number of repeats |
dimeric |
9 |
1145 |
11875 |
2151 |
3774 |
|
Comment |
|
10 |
3851 |
1474 |
9954 |
2118 |
|
Representative matrix |
yes |
11 |
3584 |
756 |
17846 |
1546 |
|
|
|
12 |
7104 |
26 |
8821 |
190 |
|
|
|
13 |
0 |
19350 |
4 |
1 |
|
|
|
14 |
12925 |
250 |
157 |
1155 |
|
|
|
15 |
1825 |
118 |
89 |
17864 |
|
|
|
16 |
327 |
33 |
20549 |
68 |
|
Source: |
|
17 |
879 |
3338 |
116 |
17859 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
1472 |
9183 |
825 |
9120 |
|
|
|