Tp53_1

 

 

 

 

A

C

G

T

 

Name

Tp53

1

4990

29

814

339

 

TF group

p53l

2

1

8241

1

6

 

Polypeptide used

DBD

3

4890

1

17

12

 

Ligand sequence

TCGGGG20NGGT

4

2665

6

1205

3371

 

Batch of SELEX experiment

AK

5

21

0

8142

60

 

Seed sequence

ACAWGTCNNNNRACAWGT

6

352

1545

78

7929

 

Hamming distance of sequences to seed

2

7

926

5259

1866

966

 

SELEX cycle

4

8

1697

2476

862

2122

 

Number of repeats

dimeric

9

2606

528

2344

1301

 

Comment

 

10

1928

419

2189

2578

 

Representative matrix

yes

11

1837

898

2361

2009

 

 

 

12

2747

97

3685

509

 

 

 

13

5312

20

1777

537

 

 

 

14

7

7913

7

74

 

 

 

15

5436

12

21

65

 

 

 

16

2517

8

950

3598

 

Source:

 

17

28

187

8776

8

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

377

679

90

7725

 

 

 

 

 

 

 

 

 

 

 

 

Tp53_2

 

 

 

 

A

C

G

T

 

Name

Tp53

1

7761

7

804

213

 

TF group

p53l

2

0

13200

0

8

 

Polypeptide used

DBD

3

7918

48

62

4

 

Ligand sequence

TCGGGG20NGGT

4

4585

60

438

5255

 

Batch of SELEX experiment

AK

5

33

24

12932

216

 

Seed sequence

ACAWGTCNNNRRCAWGT

6

129

1542

28

11821

 

Hamming distance of sequences to seed

2

7

514

11025

772

1435

 

SELEX cycle

4

8

2714

2143

2095

4388

 

Number of repeats

dimeric

9

4192

1871

2988

1653

 

Comment

 

10

3467

1228

2932

3586

 

Representative matrix

yes

11

2888

85

8363

1190

 

 

 

12

7486

25

1394

132

 

 

 

13

23

12857

0

5

 

 

 

14

8666

23

71

41

 

 

 

15

2682

157

1283

7505

 

Source:

 

16

28

125

13534

110

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

371

972

70

11850

 

 

 

 

 

 

 

 

 

 

 

 

Tp53_3

 

 

 

 

A

C

G

T

 

Name

Tp53

1

7544

1037

6563

2268

 

TF group

p53l

2

10514

116

2433

735

 

Polypeptide used

DBD

3

45

19689

13

837

 

Ligand sequence

TCGGGG20NGGT

4

11931

204

653

739

 

Batch of SELEX experiment

AK

5

1710

374

137

18893

 

Seed sequence

RACATGYCNNGRCATGTY

6

8

2

20393

0

 

Hamming distance of sequences to seed

2

7

244

12014

109

7106

 

SELEX cycle

4

8

1228

17286

417

2642

 

Number of repeats

dimeric

9

1145

11875

2151

3774

 

Comment

 

10

3851

1474

9954

2118

 

Representative matrix

yes

11

3584

756

17846

1546

 

 

 

12

7104

26

8821

190

 

 

 

13

0

19350

4

1

 

 

 

14

12925

250

157

1155

 

 

 

15

1825

118

89

17864

 

 

 

16

327

33

20549

68

 

Source:

 

17

879

3338

116

17859

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

1472

9183

825

9120