|
|
THRB_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
THRB |
|
1 |
2864 |
2112 |
6564 |
3974 |
|
TF group |
nuclearreceptor |
|
2 |
56 |
758 |
36 |
14698 |
|
Polypeptide used |
DBD |
|
3 |
323 |
232 |
18361 |
84 |
|
Ligand sequence |
TGGCAA30NACT |
|
4 |
11124 |
136 |
227 |
2729 |
|
Batch of SELEX experiment |
AI |
|
5 |
34 |
14883 |
69 |
12 |
|
Seed sequence |
NTGACCTNATNAGGTCAN |
|
6 |
11 |
14905 |
62 |
9 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
13 |
3718 |
78 |
13332 |
|
SELEX cycle |
4 |
|
8 |
311 |
4050 |
5335 |
6260 |
|
Number of repeats |
dimeric |
|
9 |
11474 |
241 |
1713 |
17 |
|
Comment |
|
|
10 |
27 |
1699 |
312 |
14244 |
|
Representative matrix |
no |
|
11 |
6477 |
2720 |
4749 |
383 |
|
|
|
|
12 |
11157 |
24 |
2276 |
7 |
|
|
|
|
13 |
11 |
5 |
17427 |
5 |
|
|
|
|
14 |
6 |
5 |
17594 |
24 |
|
|
|
|
15 |
3521 |
546 |
444 |
12956 |
|
|
|
|
16 |
396 |
13653 |
1342 |
381 |
|
Source: |
|
|
17 |
12245 |
8 |
474 |
27 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
18 |
2742 |
5696 |
1726 |
4460 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
THRB_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
THRB |
|
1 |
2851 |
1430 |
7901 |
5028 |
|
TF group |
nuclearreceptor |
|
2 |
67 |
496 |
74 |
16605 |
|
Polypeptide used |
DBD |
|
3 |
789 |
350 |
18826 |
79 |
|
Ligand sequence |
TGGCAA30NACT |
|
4 |
11092 |
164 |
343 |
3105 |
|
Batch of SELEX experiment |
AI |
|
5 |
27 |
16303 |
35 |
6 |
|
Seed sequence |
NTGACCTNNNNNAGGTCAN |
|
6 |
20 |
16272 |
43 |
9 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
11 |
2316 |
66 |
15096 |
|
SELEX cycle |
4 |
|
8 |
373 |
4706 |
3316 |
8722 |
|
Number of repeats |
dimeric |
|
9 |
10870 |
46 |
3121 |
129 |
|
Comment |
|
|
10 |
3755 |
3028 |
4289 |
5195 |
|
Representative matrix |
yes |
|
11 |
65 |
2761 |
295 |
13531 |
|
|
|
|
12 |
9166 |
1570 |
3897 |
198 |
|
|
|
|
13 |
13115 |
25 |
921 |
9 |
|
|
|
|
14 |
11 |
6 |
19527 |
102 |
|
|
|
|
15 |
8 |
3 |
19500 |
259 |
|
|
|
|
16 |
1988 |
265 |
303 |
15278 |
|
|
|
|
17 |
137 |
15699 |
717 |
385 |
|
Source: |
|
|
18 |
13448 |
30 |
617 |
22 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
19 |
3456 |
6692 |
1831 |
3985 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
THRB_3 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
THRB |
|
1 |
3018 |
1172 |
4126 |
4040 |
|
TF group |
nuclearreceptor |
|
2 |
36 |
549 |
36 |
12272 |
|
Polypeptide used |
DBD |
|
3 |
346 |
312 |
14949 |
81 |
|
Ligand sequence |
TGGCAA30NACT |
|
4 |
9290 |
164 |
222 |
1691 |
|
Batch of SELEX experiment |
AI |
|
5 |
44 |
12375 |
31 |
4 |
|
Seed sequence |
NTGACCTYANNTRAGGTCAN |
|
6 |
16 |
12237 |
117 |
15 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
6 |
1359 |
58 |
12099 |
|
SELEX cycle |
4 |
|
8 |
591 |
4176 |
1662 |
7269 |
|
Number of repeats |
dimeric |
|
9 |
9341 |
143 |
2373 |
11 |
|
Comment |
|
|
10 |
2322 |
3851 |
2471 |
3602 |
|
Representative matrix |
yes |
|
11 |
5130 |
1582 |
1143 |
3439 |
|
|
|
|
12 |
104 |
2390 |
129 |
11950 |
|
|
|
|
13 |
5780 |
1614 |
5244 |
222 |
|
|
|
|
14 |
10148 |
14 |
1074 |
5 |
|
|
|
|
15 |
5 |
72 |
14323 |
17 |
|
|
|
|
16 |
3 |
72 |
14455 |
56 |
|
|
|
|
17 |
4543 |
310 |
269 |
10351 |
|
|
|
|
18 |
469 |
11163 |
804 |
401 |
|
Source: |
|
|
19 |
10394 |
27 |
440 |
108 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
20 |
2053 |
5442 |
2326 |
2221 |
|
|
|