|
TFAP2C_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TFAP2C |
1 |
1289 |
1427 |
308 |
2810 |
|
TF group |
TFAP |
2 |
878 |
1693 |
5834 |
139 |
|
Polypeptide used |
DBD |
3 |
70 |
5834 |
621 |
51 |
|
Ligand sequence |
TCTACA20NCAG |
4 |
24 |
5834 |
9 |
121 |
|
Batch of SELEX experiment |
Y |
5 |
37 |
3594 |
384 |
1820 |
|
Seed sequence |
NGCCNNNNGGCN |
6 |
516 |
2124 |
1327 |
1867 |
|
Hamming distance of sequences to seed |
1 |
7 |
2405 |
1450 |
1702 |
277 |
|
SELEX cycle |
3 |
8 |
2216 |
341 |
3261 |
17 |
|
Number of repeats |
dimeric |
9 |
163 |
12 |
5834 |
16 |
|
Comment |
|
10 |
111 |
742 |
5834 |
37 |
|
Representative matrix |
no |
11 |
254 |
5834 |
1172 |
599 |
|
Source: |
|
12 |
3485 |
389 |
1035 |
925 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
TFAP2C_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TFAP2C |
1 |
2750 |
2292 |
566 |
2150 |
|
TF group |
TFAP |
2 |
159 |
836 |
6921 |
71 |
|
Polypeptide used |
DBD |
3 |
0 |
7757 |
148 |
0 |
|
Ligand sequence |
TCTACA20NCAG |
4 |
3 |
7757 |
33 |
595 |
|
Batch of SELEX experiment |
Y |
5 |
148 |
1751 |
1117 |
4740 |
|
Seed sequence |
NSCCNNNGGSN |
6 |
1124 |
2896 |
2871 |
867 |
|
Hamming distance of sequences to seed |
1 |
7 |
5725 |
837 |
1139 |
56 |
|
SELEX cycle |
3 |
8 |
1038 |
85 |
7757 |
17 |
|
Number of repeats |
dimeric |
9 |
0 |
108 |
7757 |
0 |
|
Comment |
|
10 |
127 |
7064 |
694 |
97 |
|
Representative matrix |
no |
11 |
3008 |
509 |
1870 |
2370 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
TFAP2C_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TFAP2C |
1 |
532 |
350 |
215 |
1466 |
|
TF group |
TFAP |
2 |
0 |
659 |
2379 |
0 |
|
Polypeptide used |
DBD |
3 |
0 |
2496 |
0 |
0 |
|
Ligand sequence |
TCTACA20NCAG |
4 |
0 |
2408 |
0 |
0 |
|
Batch of SELEX experiment |
Y |
5 |
17 |
2073 |
95 |
330 |
|
Seed sequence |
NSCCNNNNNGGSN |
6 |
89 |
1001 |
404 |
1217 |
|
Hamming distance of sequences to seed |
0 |
7 |
365 |
913 |
924 |
425 |
|
SELEX cycle |
3 |
8 |
1013 |
362 |
984 |
73 |
|
Number of repeats |
dimeric |
9 |
380 |
110 |
2359 |
20 |
|
Comment |
|
10 |
0 |
0 |
3082 |
0 |
|
Representative matrix |
no |
11 |
0 |
0 |
3137 |
0 |
|
|
|
12 |
0 |
2128 |
519 |
0 |
|
Source: |
|
13 |
1282 |
174 |
343 |
435 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
TFAP2C_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TFAP2C |
1 |
177 |
170 |
36 |
290 |
|
TF group |
TFAP |
2 |
108 |
303 |
672 |
55 |
|
Polypeptide used |
full |
3 |
11 |
672 |
35 |
3 |
|
Ligand sequence |
TGTCGT20NGCG |
4 |
17 |
672 |
10 |
7 |
|
Batch of SELEX experiment |
AE |
5 |
13 |
412 |
47 |
200 |
|
Seed sequence |
NGCCNNNNGGCN |
6 |
64 |
251 |
145 |
212 |
|
Hamming distance of sequences to seed |
1 |
7 |
301 |
173 |
178 |
20 |
|
SELEX cycle |
3 |
8 |
242 |
38 |
392 |
0 |
|
Number of repeats |
dimeric |
9 |
73 |
96 |
672 |
78 |
|
Comment |
|
10 |
21 |
205 |
672 |
4 |
|
Representative
matrix |
no |
11 |
19 |
672 |
97 |
53 |
|
Source: |
|
12 |
392 |
64 |
117 |
99 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
TFAP2C_5 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TFAP2C |
1 |
80 |
78 |
62 |
261 |
|
TF group |
TFAP |
2 |
0 |
0 |
675 |
0 |
|
Polypeptide used |
full |
3 |
0 |
402 |
0 |
0 |
|
Ligand sequence |
TGTCGT20NGCG |
4 |
0 |
411 |
0 |
0 |
|
Batch of SELEX experiment |
AE |
5 |
30 |
287 |
49 |
75 |
|
Seed sequence |
NGCCNNNNNGGCN |
6 |
44 |
158 |
101 |
176 |
|
Hamming distance of sequences to seed |
0 |
7 |
86 |
132 |
187 |
80 |
|
SELEX cycle |
3 |
8 |
193 |
73 |
127 |
44 |
|
Number of repeats |
dimeric |
9 |
79 |
35 |
406 |
38 |
|
Comment |
|
10 |
0 |
0 |
657 |
0 |
|
Representative matrix |
no |
11 |
0 |
0 |
659 |
0 |
|
|
|
12 |
0 |
386 |
0 |
0 |
|
Source: |
|
13 |
209 |
79 |
59 |
70 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
TFAP2C_6 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TFAP2C |
1 |
382 |
245 |
123 |
276 |
|
TF group |
TFAP |
2 |
0 |
251 |
775 |
13 |
|
Polypeptide used |
full |
3 |
0 |
1026 |
18 |
0 |
|
Ligand sequence |
TGTCGT20NGCG |
4 |
11 |
1026 |
5 |
37 |
|
Batch of SELEX experiment |
AE |
5 |
44 |
272 |
131 |
580 |
|
Seed sequence |
NSCCNNNGGSN |
6 |
172 |
446 |
319 |
89 |
|
Hamming distance of sequences to seed |
1 |
7 |
741 |
110 |
135 |
41 |
|
SELEX cycle |
3 |
8 |
106 |
210 |
1026 |
162 |
|
Number of repeats |
dimeric |
9 |
0 |
220 |
1026 |
69 |
|
Comment |
|
10 |
21 |
953 |
73 |
2 |
|
Representative
matrix |
no |
11 |
398 |
91 |
213 |
324 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |