TFAP2C_1

 

 

 

 

A

C

G

T

 

Name

TFAP2C

1

1289

1427

308

2810

 

TF group

TFAP

2

878

1693

5834

139

 

Polypeptide used

DBD

3

70

5834

621

51

 

Ligand sequence

TCTACA20NCAG

4

24

5834

9

121

 

Batch of SELEX experiment

Y

5

37

3594

384

1820

 

Seed sequence

NGCCNNNNGGCN

6

516

2124

1327

1867

 

Hamming distance of sequences to seed

1

7

2405

1450

1702

277

 

SELEX cycle

3

8

2216

341

3261

17

 

Number of repeats

dimeric

9

163

12

5834

16

 

Comment

 

10

111

742

5834

37

 

Representative matrix

no

11

254

5834

1172

599

 

Source:

 

12

3485

389

1035

925

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

TFAP2C_2

 

 

 

 

A

C

G

T

 

Name

TFAP2C

1

2750

2292

566

2150

 

TF group

TFAP

2

159

836

6921

71

 

Polypeptide used

DBD

3

0

7757

148

0

 

Ligand sequence

TCTACA20NCAG

4

3

7757

33

595

 

Batch of SELEX experiment

Y

5

148

1751

1117

4740

 

Seed sequence

NSCCNNNGGSN

6

1124

2896

2871

867

 

Hamming distance of sequences to seed

1

7

5725

837

1139

56

 

SELEX cycle

3

8

1038

85

7757

17

 

Number of repeats

dimeric

9

0

108

7757

0

 

Comment

 

10

127

7064

694

97

 

Representative matrix

no

11

3008

509

1870

2370

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

TFAP2C_3

 

 

 

 

A

C

G

T

 

Name

TFAP2C

1

532

350

215

1466

 

TF group

TFAP

2

0

659

2379

0

 

Polypeptide used

DBD

3

0

2496

0

0

 

Ligand sequence

TCTACA20NCAG

4

0

2408

0

0

 

Batch of SELEX experiment

Y

5

17

2073

95

330

 

Seed sequence

NSCCNNNNNGGSN

6

89

1001

404

1217

 

Hamming distance of sequences to seed

0

7

365

913

924

425

 

SELEX cycle

3

8

1013

362

984

73

 

Number of repeats

dimeric

9

380

110

2359

20

 

Comment

 

10

0

0

3082

0

 

Representative matrix

no

11

0

0

3137

0

 

 

 

12

0

2128

519

0

 

Source:

 

13

1282

174

343

435

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

TFAP2C_4

 

 

 

 

A

C

G

T

 

Name

TFAP2C

1

177

170

36

290

 

TF group

TFAP

2

108

303

672

55

 

Polypeptide used

full

3

11

672

35

3

 

Ligand sequence

TGTCGT20NGCG

4

17

672

10

7

 

Batch of SELEX experiment

AE

5

13

412

47

200

 

Seed sequence

NGCCNNNNGGCN

6

64

251

145

212

 

Hamming distance of sequences to seed

1

7

301

173

178

20

 

SELEX cycle

3

8

242

38

392

0

 

Number of repeats

dimeric

9

73

96

672

78

 

Comment

 

10

21

205

672

4

 

Representative matrix

no

11

19

672

97

53

 

Source:

 

12

392

64

117

99

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

TFAP2C_5

 

 

 

 

A

C

G

T

 

Name

TFAP2C

1

80

78

62

261

 

TF group

TFAP

2

0

0

675

0

 

Polypeptide used

full

3

0

402

0

0

 

Ligand sequence

TGTCGT20NGCG

4

0

411

0

0

 

Batch of SELEX experiment

AE

5

30

287

49

75

 

Seed sequence

NGCCNNNNNGGCN

6

44

158

101

176

 

Hamming distance of sequences to seed

0

7

86

132

187

80

 

SELEX cycle

3

8

193

73

127

44

 

Number of repeats

dimeric

9

79

35

406

38

 

Comment

 

10

0

0

657

0

 

Representative matrix

no

11

0

0

659

0

 

 

 

12

0

386

0

0

 

Source:

 

13

209

79

59

70

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

TFAP2C_6

 

 

 

 

A

C

G

T

 

Name

TFAP2C

1

382

245

123

276

 

TF group

TFAP

2

0

251

775

13

 

Polypeptide used

full

3

0

1026

18

0

 

Ligand sequence

TGTCGT20NGCG

4

11

1026

5

37

 

Batch of SELEX experiment

AE

5

44

272

131

580

 

Seed sequence

NSCCNNNGGSN

6

172

446

319

89

 

Hamming distance of sequences to seed

1

7

741

110

135

41

 

SELEX cycle

3

8

106

210

1026

162

 

Number of repeats

dimeric

9

0

220

1026

69

 

Comment

 

10

21

953

73

2

 

Representative matrix

no

11

398

91

213

324

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764