TFAP2A_1

 

 

 

 

A

C

G

T

 

Name

TFAP2A

1

678

1183

173

1971

 

TF group

TFAP

2

838

1906

4006

147

 

Polypeptide used

DBD

3

15

4006

229

0

 

Ligand sequence

TTGCAC20NTA

4

0

4006

10

33

 

Batch of SELEX experiment

AF

5

10

2812

221

963

 

Seed sequence

NGCCNNNNGGCN

6

197

1653

831

1324

 

Hamming distance of sequences to seed

1

7

1324

1439

1054

189

 

SELEX cycle

3

8

1697

407

1873

28

 

Number of repeats

dimeric

9

191

34

4006

0

 

Comment

 

10

5

788

4006

10

 

Representative matrix

no

11

101

4006

468

226

 

Source:

 

12

1922

434

979

671

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

TFAP2A_2

 

 

 

 

A

C

G

T

 

Name

TFAP2A

1

1706

1939

277

1386

 

TF group

TFAP

2

137

968

4340

47

 

Polypeptide used

DBD

3

0

5309

139

0

 

Ligand sequence

TTGCAC20NTA

4

0

5309

11

281

 

Batch of SELEX experiment

AF

5

33

1646

658

2972

 

Seed sequence

NSCCNNNGGSN

6

575

2682

1613

438

 

Hamming distance of sequences to seed

1

7

3640

995

618

56

 

SELEX cycle

3

8

1012

224

5309

0

 

Number of repeats

dimeric

9

0

31

5309

0

 

Comment

 

10

31

4726

582

21

 

Representative matrix

no

11

1865

798

1295

1350

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

TFAP2A_3

 

 

 

 

A

C

G

T

 

Name

TFAP2A

1

1084

580

636

1719

 

TF group

TFAP

2

0

1458

2986

0

 

Polypeptide used

DBD

3

0

2975

0

0

 

Ligand sequence

TTGCAC20NTA

4

0

2966

0

0

 

Batch of SELEX experiment

AF

5

283

2194

427

457

 

Seed sequence

NSCCNNNNNGGSN

6

304

1602

537

1243

 

Hamming distance of sequences to seed

0

7

497

1277

1155

1019

 

SELEX cycle

3

8

1263

889

1441

417

 

Number of repeats

dimeric

9

1083

433

2760

320

 

Comment

 

10

0

0

5785

0

 

Representative matrix

no

11

0

0

5755

0

 

 

 

12

0

2425

1066

0

 

Source:

 

13

1628

575

924

818

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Tcfap2a_4

 

 

 

 

A

C

G

T

 

Name

Tcfap2a

1

372

691

84

1471

 

TF group

TFAP

2

255

636

2618

5

 

Polypeptide used

DBD

3

13

2618

154

0

 

Ligand sequence

TGATCC20NCG

4

24

2618

0

22

 

Batch of SELEX experiment

P

5

6

1875

134

602

 

Seed sequence

NGCCNNNNGGCN

6

92

1175

485

867

 

Hamming distance of sequences to seed

1

7

807

919

785

107

 

SELEX cycle

3

8

1100

243

1265

11

 

Number of repeats

dimeric

9

18

51

2618

17

 

Comment

 

10

0

463

2618

0

 

Representative matrix

yes

11

6

2618

222

102

 

Source:

 

12

1367

222

570

460

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Tcfap2a_5

 

 

 

 

A

C

G

T

 

Name

Tcfap2a

1

865

915

171

488

 

TF group

TFAP

2

0

347

2092

49

 

Polypeptide used

DBD

3

0

2439

88

0

 

Ligand sequence

TGATCC20NCG

4

0

2439

79

96

 

Batch of SELEX experiment

P

5

0

766

287

1387

 

Seed sequence

NSCCNNNGGSN

6

144

1269

909

117

 

Hamming distance of sequences to seed

1

7

1714

368

340

17

 

SELEX cycle

3

8

98

94

2439

0

 

Number of repeats

dimeric

9

0

164

2439

0

 

Comment

 

10

0

2299

140

0

 

Representative matrix

yes

11

823

181

616

820

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Tcfap2a_6

 

 

 

 

A

C

G

T

 

Name

Tcfap2a

1

868

349

383

2115

 

TF group

TFAP

2

0

817

2951

0

 

Polypeptide used

DBD

3

0

2170

0

0

 

Ligand sequence

TGATCC20NCG

4

0

2166

0

0

 

Batch of SELEX experiment

P

5

143

1751

267

333

 

Seed sequence

NSCCNNNNNGGSN

6

180

1101

470

1453

 

Hamming distance of sequences to seed

0

7

345

949

1295

771

 

SELEX cycle

3

8

1354

534

1340

265

 

Number of repeats

dimeric

9

713

189

3127

266

 

Comment

 

10

0

0

4885

0

 

Representative matrix

yes

11

0

0

4892

0

 

 

 

12

0

1921

531

0

 

Source:

 

13

1796

304

632

681

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764