|
TFAP2A_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TFAP2A |
1 |
678 |
1183 |
173 |
1971 |
|
TF group |
TFAP |
2 |
838 |
1906 |
4006 |
147 |
|
Polypeptide used |
DBD |
3 |
15 |
4006 |
229 |
0 |
|
Ligand sequence |
TTGCAC20NTA |
4 |
0 |
4006 |
10 |
33 |
|
Batch of SELEX experiment |
AF |
5 |
10 |
2812 |
221 |
963 |
|
Seed sequence |
NGCCNNNNGGCN |
6 |
197 |
1653 |
831 |
1324 |
|
Hamming distance of sequences to seed |
1 |
7 |
1324 |
1439 |
1054 |
189 |
|
SELEX cycle |
3 |
8 |
1697 |
407 |
1873 |
28 |
|
Number of repeats |
dimeric |
9 |
191 |
34 |
4006 |
0 |
|
Comment |
|
10 |
5 |
788 |
4006 |
10 |
|
Representative matrix |
no |
11 |
101 |
4006 |
468 |
226 |
|
Source: |
|
12 |
1922 |
434 |
979 |
671 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
TFAP2A_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TFAP2A |
1 |
1706 |
1939 |
277 |
1386 |
|
TF group |
TFAP |
2 |
137 |
968 |
4340 |
47 |
|
Polypeptide used |
DBD |
3 |
0 |
5309 |
139 |
0 |
|
Ligand sequence |
TTGCAC20NTA |
4 |
0 |
5309 |
11 |
281 |
|
Batch of SELEX experiment |
AF |
5 |
33 |
1646 |
658 |
2972 |
|
Seed sequence |
NSCCNNNGGSN |
6 |
575 |
2682 |
1613 |
438 |
|
Hamming distance of sequences to seed |
1 |
7 |
3640 |
995 |
618 |
56 |
|
SELEX cycle |
3 |
8 |
1012 |
224 |
5309 |
0 |
|
Number of repeats |
dimeric |
9 |
0 |
31 |
5309 |
0 |
|
Comment |
|
10 |
31 |
4726 |
582 |
21 |
|
Representative matrix |
no |
11 |
1865 |
798 |
1295 |
1350 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
TFAP2A_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
TFAP2A |
1 |
1084 |
580 |
636 |
1719 |
|
TF group |
TFAP |
2 |
0 |
1458 |
2986 |
0 |
|
Polypeptide used |
DBD |
3 |
0 |
2975 |
0 |
0 |
|
Ligand sequence |
TTGCAC20NTA |
4 |
0 |
2966 |
0 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
283 |
2194 |
427 |
457 |
|
Seed sequence |
NSCCNNNNNGGSN |
6 |
304 |
1602 |
537 |
1243 |
|
Hamming distance of sequences to seed |
0 |
7 |
497 |
1277 |
1155 |
1019 |
|
SELEX cycle |
3 |
8 |
1263 |
889 |
1441 |
417 |
|
Number of repeats |
dimeric |
9 |
1083 |
433 |
2760 |
320 |
|
Comment |
|
10 |
0 |
0 |
5785 |
0 |
|
Representative matrix |
no |
11 |
0 |
0 |
5755 |
0 |
|
|
|
12 |
0 |
2425 |
1066 |
0 |
|
Source: |
|
13 |
1628 |
575 |
924 |
818 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Tcfap2a_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Tcfap2a |
1 |
372 |
691 |
84 |
1471 |
|
TF group |
TFAP |
2 |
255 |
636 |
2618 |
5 |
|
Polypeptide used |
DBD |
3 |
13 |
2618 |
154 |
0 |
|
Ligand sequence |
TGATCC20NCG |
4 |
24 |
2618 |
0 |
22 |
|
Batch of SELEX experiment |
P |
5 |
6 |
1875 |
134 |
602 |
|
Seed sequence |
NGCCNNNNGGCN |
6 |
92 |
1175 |
485 |
867 |
|
Hamming distance of sequences to seed |
1 |
7 |
807 |
919 |
785 |
107 |
|
SELEX cycle |
3 |
8 |
1100 |
243 |
1265 |
11 |
|
Number of repeats |
dimeric |
9 |
18 |
51 |
2618 |
17 |
|
Comment |
|
10 |
0 |
463 |
2618 |
0 |
|
Representative matrix |
yes |
11 |
6 |
2618 |
222 |
102 |
|
Source: |
|
12 |
1367 |
222 |
570 |
460 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Tcfap2a_5 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Tcfap2a |
1 |
865 |
915 |
171 |
488 |
|
TF group |
TFAP |
2 |
0 |
347 |
2092 |
49 |
|
Polypeptide used |
DBD |
3 |
0 |
2439 |
88 |
0 |
|
Ligand sequence |
TGATCC20NCG |
4 |
0 |
2439 |
79 |
96 |
|
Batch of SELEX experiment |
P |
5 |
0 |
766 |
287 |
1387 |
|
Seed sequence |
NSCCNNNGGSN |
6 |
144 |
1269 |
909 |
117 |
|
Hamming distance of sequences to seed |
1 |
7 |
1714 |
368 |
340 |
17 |
|
SELEX cycle |
3 |
8 |
98 |
94 |
2439 |
0 |
|
Number of repeats |
dimeric |
9 |
0 |
164 |
2439 |
0 |
|
Comment |
|
10 |
0 |
2299 |
140 |
0 |
|
Representative matrix |
yes |
11 |
823 |
181 |
616 |
820 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
Tcfap2a_6 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Tcfap2a |
1 |
868 |
349 |
383 |
2115 |
|
TF group |
TFAP |
2 |
0 |
817 |
2951 |
0 |
|
Polypeptide used |
DBD |
3 |
0 |
2170 |
0 |
0 |
|
Ligand sequence |
TGATCC20NCG |
4 |
0 |
2166 |
0 |
0 |
|
Batch of SELEX experiment |
P |
5 |
143 |
1751 |
267 |
333 |
|
Seed sequence |
NSCCNNNNNGGSN |
6 |
180 |
1101 |
470 |
1453 |
|
Hamming distance of sequences to seed |
0 |
7 |
345 |
949 |
1295 |
771 |
|
SELEX cycle |
3 |
8 |
1354 |
534 |
1340 |
265 |
|
Number of repeats |
dimeric |
9 |
713 |
189 |
3127 |
266 |
|
Comment |
|
10 |
0 |
0 |
4885 |
0 |
|
Representative matrix |
yes |
11 |
0 |
0 |
4892 |
0 |
|
|
|
12 |
0 |
1921 |
531 |
0 |
|
Source: |
|
13 |
1796 |
304 |
632 |
681 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |