|
|
TBX5_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
TBX5 |
|
1 |
1804 |
89 |
409 |
207 |
|
TF group |
TBX |
|
2 |
235 |
190 |
1804 |
133 |
|
Polypeptide used |
DBD |
|
3 |
0 |
0 |
1804 |
28 |
|
Ligand sequence |
TAGAAC40NAAT |
|
4 |
45 |
131 |
166 |
1804 |
|
Batch of SELEX experiment |
AI |
|
5 |
27 |
0 |
1804 |
0 |
|
Seed sequence |
AGGTGTGA |
|
6 |
162 |
225 |
201 |
1804 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
126 |
616 |
1804 |
915 |
|
SELEX cycle |
3 |
|
8 |
1804 |
76 |
343 |
283 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
TBX5_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
TBX5 |
|
1 |
1429 |
34 |
183 |
155 |
|
TF group |
TBX |
|
2 |
288 |
222 |
1924 |
110 |
|
Polypeptide used |
DBD |
|
3 |
8 |
16 |
2217 |
9 |
|
Ligand sequence |
TAGAAC40NAAT |
|
4 |
7 |
208 |
20 |
2098 |
|
Batch of SELEX experiment |
AI |
|
5 |
3 |
1 |
2239 |
1 |
|
Seed sequence |
AGGTGTNANWWNTNACACCT |
|
6 |
205 |
244 |
44 |
1966 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
63 |
275 |
1111 |
610 |
|
SELEX cycle |
3 |
|
8 |
1447 |
10 |
234 |
80 |
|
Number of repeats |
dimeric |
|
9 |
652 |
338 |
342 |
401 |
|
Comment |
|
|
10 |
1106 |
61 |
88 |
564 |
|
Representative
matrix |
no |
|
11 |
577 |
79 |
94 |
1312 |
|
|
|
|
12 |
493 |
260 |
274 |
821 |
|
|
|
|
13 |
70 |
206 |
50 |
2088 |
|
|
|
|
14 |
295 |
820 |
447 |
77 |
|
|
|
|
15 |
1458 |
25 |
164 |
85 |
|
|
|
|
16 |
1 |
1443 |
3 |
1 |
|
|
|
|
17 |
1487 |
5 |
160 |
0 |
|
|
|
|
18 |
7 |
1446 |
14 |
3 |
|
Source: |
|
|
19 |
93 |
1321 |
195 |
251 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
20 |
199 |
252 |
62 |
1924 |
|
|
|