TBX15_d1

 

 

 

 

A

C

G

T

 

Name

TBX15

1

3013

1

150

158

 

TF group

TBX

2

49

112

4299

158

 

Polypeptide used

DBD

3

0

7

4230

6

 

Ligand sequence

TACGTC40NTGC

4

14

117

58

3788

 

Batch of SELEX experiment

AI

5

1

0

4633

0

 

Seed sequence

AGGTGTGAANTTCACACCT

6

210

142

18

3887

 

Hamming distance of sequences to seed

2

7

49

217

4195

628

 

SELEX cycle

4

8

3033

0

6

0

 

Number of repeats

dimeric

9

2868

62

5

453

 

Comment

 

10

2412

5

464

378

 

Representative matrix

yes

11

139

15

185

3896

 

 

 

12

1

0

5

3919

 

 

 

13

146

2496

141

110

 

 

 

14

2951

18

92

5

 

 

 

15

1

2593

2

0

 

 

 

16

2996

6

4

0

 

 

 

17

7

2524

0

0

 

Source:

 

18

4

2523

0

20

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

19

99

158

8

3900

 

 

 

 

 

 

 

 

 

 

 

 

TBX15_m1

 

 

 

 

A

C

G

T

 

Name

TBX15

1

10502

74

664

112

 

TF group

TBX

2

458

101

10502

103

 

Polypeptide used

DBD

3

19

7

10502

0

 

Ligand sequence

TACGTC40NTGC

4

61

175

245

10502

 

Batch of SELEX experiment

AI

5

0

8

10502

0

 

Seed sequence

AGGTGTGA

6

140

435

324

10502

 

Hamming distance of sequences to seed

1

7

44

454

10502

937

 

SELEX cycle

4

8

10502

71

306

96

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764