Sox3_1

 

 

 

 

A

C

G

T

 

Name

Sox3

1

6205

1258

1565

812

 

TF group

HMG

2

9840

25

120

64

 

Polypeptide used

DBD

3

9840

6

110

17

 

Ligand sequence

TGGGGT20NCG

4

2

9840

0

15

 

Batch of SELEX experiment

Q

5

9840

2

1

8

 

Seed sequence

NAACAATRNYATTGTTN

6

9840

1

2

0

 

Hamming distance of sequences to seed

1

7

0

3

0

9840

 

SELEX cycle

4

8

3721

11

6118

1306

 

Number of repeats

dimeric

9

4648

1491

1659

2042

 

Comment

possible binding to single stranded DNA

10

1162

5008

1

4832

 

Representative matrix

no

11

9840

4

0

1

 

 

 

12

17

12

1162

9840

 

 

 

13

27

10

4

9840

 

 

 

14

12

12

9840

7

 

 

 

15

40

12

6

9840

 

Source:

 

16

288

123

92

9840

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

1463

153

2263

5961

 

 

 

 

 

 

 

 

 

 

 

 

Sox3_2

 

 

 

 

A

C

G

T

 

Name

Sox3

1

113

459

623

282

 

TF group

HMG

2

1477

96

197

98

 

Polypeptide used

DBD

3

54

1

7

1477

 

Ligand sequence

TGGGGT20NCG

4

0

1477

2

10

 

Batch of SELEX experiment

Q

5

1477

0

1

0

 

Seed sequence

NATCAATKNYATTGATN

6

1477

0

1

0

 

Hamming distance of sequences to seed

1

7

0

1

0

1477

 

SELEX cycle

4

8

0

0

1116

361

 

Number of repeats

dimeric

9

103

226

352

796

 

Comment

possible binding to single stranded DNA

10

1

492

1

985

 

Representative matrix

no

11

1477

0

0

0

 

 

 

12

2

0

370

1477

 

 

 

13

2

2

1

1477

 

 

 

14

2

1

1477

1

 

 

 

15

1477

2

52

25

 

Source:

 

16

146

32

94

1477

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

338

120

418

602

 

 

 

 

 

 

 

 

 

 

 

 

Sox3_3

 

 

 

 

A

C

G

T

 

Name

Sox3

1

1057

427

2420

1848

 

TF group

HMG

2

5752

82

253

289

 

Polypeptide used

DBD

3

13

2

1

5752

 

Ligand sequence

TGGGGT20NCG

4

12

1

5752

0

 

Batch of SELEX experiment

Q

5

5752

1

4

2

 

Seed sequence

NATGAATKNYATTCATN

6

5752

2

3

2

 

Hamming distance of sequences to seed

1

7

1

2

1

5752

 

SELEX cycle

4

8

0

2

4032

1720

 

Number of repeats

dimeric

9

1153

1382

2155

1062

 

Comment

possible binding to single stranded DNA

10

1

2865

8

2887

 

Representative matrix

yes

11

5752

1

2

1

 

 

 

12

6

6

1365

5752

 

 

 

13

7

6

4

5752

 

 

 

14

4

5752

2

2

 

 

 

15

5752

4

4

4

 

Source:

 

16

592

45

247

5752

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

2317

303

2402

729