|
|
SRY_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
SRY |
|
1 |
5235 |
164 |
108 |
172 |
|
TF group |
HMG |
|
2 |
5235 |
26 |
15 |
22 |
|
Polypeptide used |
DBD |
|
3 |
2 |
5235 |
2 |
7 |
|
Ligand sequence |
TACTGC30NGTC |
|
4 |
5235 |
10 |
2 |
60 |
|
Batch of SELEX experiment |
AH |
|
5 |
5235 |
133 |
3 |
19 |
|
Seed sequence |
AACAATANCATTGTT |
|
6 |
4 |
7 |
4 |
5235 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
5235 |
124 |
1261 |
294 |
|
SELEX cycle |
3 |
|
8 |
1951 |
1469 |
805 |
1010 |
|
Number of repeats |
dimeric |
|
9 |
35 |
5235 |
13 |
29 |
|
Comment |
possible binding to single stranded DNA |
|
10 |
5235 |
3 |
1 |
2 |
|
Representative matrix |
no |
|
11 |
3 |
4 |
4 |
5235 |
|
|
|
|
12 |
3 |
1 |
6 |
5235 |
|
|
|
|
13 |
9 |
2 |
5235 |
4 |
|
Source: |
|
|
14 |
9 |
6 |
7 |
5235 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
52 |
70 |
26 |
5235 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
SRY_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
SRY |
|
1 |
475 |
12 |
15 |
13 |
|
TF group |
HMG |
|
2 |
475 |
0 |
1 |
2 |
|
Polypeptide used |
DBD |
|
3 |
2 |
475 |
0 |
0 |
|
Ligand sequence |
TACTGC30NGTC |
|
4 |
475 |
0 |
2 |
3 |
|
Batch of SELEX experiment |
AH |
|
5 |
475 |
6 |
0 |
0 |
|
Seed sequence |
AACAATNNNCATTGTT |
|
6 |
0 |
4 |
0 |
475 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
214 |
105 |
35 |
121 |
|
SELEX cycle |
3 |
|
8 |
161 |
93 |
46 |
175 |
|
Number of repeats |
dimeric |
|
9 |
85 |
161 |
63 |
166 |
|
Comment |
possible binding to single stranded DNA |
|
10 |
80 |
475 |
26 |
109 |
|
Representative
matrix |
no |
|
11 |
475 |
1 |
1 |
0 |
|
|
|
|
12 |
2 |
0 |
2 |
475 |
|
|
|
|
13 |
1 |
1 |
0 |
475 |
|
|
|
|
14 |
0 |
3 |
475 |
2 |
|
Source: |
|
|
15 |
0 |
0 |
0 |
475 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
16 |
8 |
9 |
3 |
475 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
SRY_3 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
SRY |
|
1 |
27 |
60 |
2 |
1611 |
|
TF group |
HMG |
|
2 |
0 |
1611 |
0 |
2 |
|
Polypeptide used |
DBD |
|
3 |
1611 |
0 |
1 |
0 |
|
Ligand sequence |
TACTGC30NGTC |
|
4 |
1611 |
1 |
0 |
4 |
|
Batch of SELEX experiment |
AH |
|
5 |
0 |
2 |
2 |
1611 |
|
Seed sequence |
TCAATANCATTGA |
|
6 |
1611 |
20 |
133 |
42 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
824 |
476 |
116 |
194 |
|
SELEX cycle |
4 |
|
8 |
0 |
1611 |
0 |
0 |
|
Number of repeats |
dimeric |
|
9 |
1611 |
0 |
0 |
0 |
|
Comment |
possible binding to single stranded DNA |
|
10 |
6 |
2 |
1 |
1611 |
|
Representative matrix |
no |
|
11 |
0 |
1 |
2 |
1611 |
|
|
|
|
12 |
5 |
8 |
1611 |
0 |
|
Source: |
|
|
13 |
1611 |
35 |
0 |
134 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
SRY_4 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
SRY |
|
1 |
6 |
4 |
0 |
674 |
|
TF group |
HMG |
|
2 |
3 |
0 |
674 |
2 |
|
Polypeptide used |
DBD |
|
3 |
674 |
0 |
0 |
5 |
|
Ligand sequence |
TACTGC30NGTC |
|
4 |
674 |
4 |
0 |
1 |
|
Batch of SELEX experiment |
AH |
|
5 |
1 |
2 |
2 |
674 |
|
Seed sequence |
TGAATANCATTCA |
|
6 |
674 |
17 |
125 |
21 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
279 |
204 |
88 |
104 |
|
SELEX cycle |
3 |
|
8 |
0 |
674 |
2 |
5 |
|
Number of repeats |
dimeric |
|
9 |
674 |
1 |
0 |
3 |
|
Comment |
possible binding to single stranded DNA |
|
10 |
0 |
0 |
0 |
674 |
|
Representative
matrix |
no |
|
11 |
1 |
0 |
0 |
674 |
|
|
|
|
12 |
0 |
674 |
3 |
44 |
|
Source: |
|
|
13 |
674 |
7 |
3 |
27 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|