|
|
SRF_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
SRF |
|
1 |
600 |
117 |
86 |
121 |
|
TF group |
MADS |
|
2 |
2 |
717 |
0 |
0 |
|
Polypeptide used |
DBD |
|
3 |
0 |
717 |
0 |
5 |
|
Ligand sequence |
TGAACG20NGA |
|
4 |
717 |
5 |
22 |
114 |
|
Batch of SELEX experiment |
Y |
|
5 |
49 |
0 |
0 |
717 |
|
Seed sequence |
MCCATATAWGGN |
|
6 |
717 |
3 |
2 |
11 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
30 |
3 |
1 |
717 |
|
SELEX cycle |
4 |
|
8 |
717 |
1 |
0 |
87 |
|
Number of repeats |
dimeric |
|
9 |
227 |
6 |
3 |
490 |
|
Comment |
|
|
10 |
4 |
1 |
717 |
0 |
|
Representative matrix |
yes |
|
11 |
0 |
2 |
717 |
1 |
|
Source: |
|
|
12 |
169 |
292 |
53 |
203 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
SRF_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
SRF |
|
1 |
214 |
125 |
80 |
1129 |
|
TF group |
MADS |
|
2 |
75 |
152 |
1144 |
372 |
|
Polypeptide used |
full |
|
3 |
627 |
611 |
144 |
167 |
|
Ligand sequence |
TGGAAT20NAAT |
|
4 |
0 |
1771 |
15 |
0 |
|
Batch of SELEX experiment |
W |
|
5 |
3 |
1787 |
11 |
19 |
|
Seed sequence |
NNMCCATATAWGGKNN |
|
6 |
1137 |
13 |
18 |
61 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
54 |
0 |
6 |
1571 |
|
SELEX cycle |
3 |
|
8 |
1163 |
0 |
2 |
0 |
|
Number of repeats |
dimeric |
|
9 |
1 |
5 |
8 |
1610 |
|
Comment |
|
|
10 |
1162 |
0 |
0 |
16 |
|
Representative
matrix |
no |
|
11 |
439 |
12 |
0 |
1074 |
|
|
|
|
12 |
8 |
9 |
1896 |
0 |
|
|
|
|
13 |
8 |
2 |
1872 |
7 |
|
|
|
|
14 |
262 |
105 |
670 |
686 |
|
Source: |
|
|
15 |
337 |
1023 |
145 |
72 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
16 |
913 |
63 |
98 |
248 |
|
|
|