|
|
SPIC_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
SPIC |
|
1 |
144 |
83 |
68 |
72 |
|
TF group |
ETS |
|
2 |
162 |
31 |
70 |
40 |
|
Polypeptide used |
full |
|
3 |
186 |
25 |
13 |
18 |
|
Ligand sequence |
TAGGCA20NCG |
|
4 |
194 |
9 |
0 |
4 |
|
Batch of SELEX experiment |
AD |
|
5 |
171 |
0 |
0 |
75 |
|
Seed sequence |
AAAAAGNGGAAGTN |
|
6 |
30 |
75 |
181 |
13 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
88 |
59 |
48 |
0 |
|
SELEX cycle |
4 |
|
8 |
0 |
8 |
217 |
3 |
|
Number of repeats |
monomeric |
|
9 |
13 |
0 |
232 |
26 |
|
Comment |
|
|
10 |
204 |
7 |
0 |
16 |
|
Representative matrix |
no |
|
11 |
192 |
31 |
13 |
8 |
|
|
|
|
12 |
13 |
0 |
231 |
0 |
|
Source: |
|
|
13 |
45 |
24 |
17 |
194 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
115 |
36 |
9 |
19 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Spic_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Spic |
|
1 |
264 |
46 |
78 |
22 |
|
TF group |
ETS |
|
2 |
243 |
10 |
40 |
20 |
|
Polypeptide used |
DBD |
|
3 |
295 |
2 |
0 |
24 |
|
Ligand sequence |
TATAGA20NCG |
|
4 |
301 |
0 |
2 |
11 |
|
Batch of SELEX experiment |
Z |
|
5 |
265 |
1 |
28 |
64 |
|
Seed sequence |
AAAAAGMGGAAGTA |
|
6 |
2 |
63 |
277 |
5 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
157 |
169 |
49 |
0 |
|
SELEX cycle |
4 |
|
8 |
2 |
0 |
273 |
0 |
|
Number of repeats |
monomeric |
|
9 |
0 |
0 |
273 |
0 |
|
Comment |
|
|
10 |
298 |
0 |
3 |
0 |
|
Representative
matrix |
no |
|
11 |
298 |
0 |
0 |
2 |
|
|
|
|
12 |
2 |
12 |
269 |
0 |
|
Source: |
|
|
13 |
2 |
0 |
3 |
267 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
191 |
22 |
42 |
78 |
|
|
|