SOX8_1

 

 

 

 

A

C

G

T

 

Name

SOX8

1

460

0

0

7

 

TF group

HMG

2

460

0

0

0

 

Polypeptide used

DBD

3

1

460

0

0

 

Ligand sequence

TCTTTC30NTTG

4

460

0

2

0

 

Batch of SELEX experiment

AI

5

460

1

1

1

 

Seed sequence

AACAATRTKCAGWGTT

6

0

0

1

460

 

Hamming distance of sequences to seed

1

7

162

7

298

37

 

SELEX cycle

4

8

1

0

0

460

 

Number of repeats

dimeric

9

30

41

371

89

 

Comment

possible binding to single stranded DNA

10

0

460

2

2

 

Representative matrix

no

11

460

0

0

0

 

 

 

12

1

0

460

2

 

 

 

13

0

0

1

460

 

 

 

14

0

0

460

0

 

Source:

 

15

1

0

0

460

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

0

4

0

460

 

 

 

 

 

 

 

 

 

 

 

 

SOX8_2

 

 

 

 

A

C

G

T

 

Name

SOX8

1

7808

372

1921

129

 

TF group

HMG

2

24

1

15

7808

 

Polypeptide used

DBD

3

17

8

7808

10

 

Ligand sequence

TCTTTC30NTTG

4

7808

4

12

2

 

Batch of SELEX experiment

AI

5

7808

4

28

11

 

Seed sequence

ATGAATKNYAGTC

6

5

4

17

7808

 

Hamming distance of sequences to seed

1

7

9

4

1033

6775

 

SELEX cycle

4

8

704

787

3298

3020

 

Number of repeats

dimeric

9

3

6878

16

930

 

Comment

possible binding to single stranded DNA

10

7808

7

13

1

 

Representative matrix

no

11

22

6

7808

826

 

 

 

12

10

13

25

7808

 

Source:

 

13

2

7808

20

4

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

SOX8_3

 

 

 

 

A

C

G

T

 

Name

SOX8

1

2665

772

3843

1056

 

TF group

HMG

2

8336

6

36

5

 

Polypeptide used

DBD

3

8336

5

289

11

 

Ligand sequence

TCTTTC30NTTG

4

17

8336

22

5

 

Batch of SELEX experiment

AI

5

8336

13

15

4

 

Seed sequence

NAACAATKNYAGTGTTN

6

8336

8

78

5

 

Hamming distance of sequences to seed

1

7

2

2

2

8336

 

SELEX cycle

4

8

6

3

988

7348

 

Number of repeats

dimeric

9

810

878

4025

2622

 

Comment

possible binding to single stranded DNA

10

11

7417

18

919

 

Representative matrix

no

11

8336

7

18

3

 

 

 

12

1

0

8336

141

 

 

 

13

6

5

29

8336

 

 

 

14

2

1

8336

2

 

 

 

15

2

0

19

8336

 

Source:

 

16

25

69

23

8336

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

1515

3082

1141

2598

 

 

 

 

 

 

 

 

 

 

 

 

SOX8_4

 

 

 

 

A

C

G

T

 

Name

SOX8

1

536

1214

76

453

 

TF group

HMG

2

2279

0

6

2

 

Polypeptide used

DBD

3

2

0

5

2279

 

Ligand sequence

TCTTTC30NTTG

4

0

2279

20

1

 

Batch of SELEX experiment

AI

5

2279

4

6

2

 

Seed sequence

NATCAATKNYAGTGATN

6

2279

0

8

1

 

Hamming distance of sequences to seed

1

7

0

0

1

2279

 

SELEX cycle

4

8

1

0

470

1809

 

Number of repeats

dimeric

9

293

101

1422

462

 

Comment

possible binding to single stranded DNA

10

6

1810

4

469

 

Representative matrix

no

11

2279

0

2

1

 

 

 

12

2

1

2279

107

 

 

 

13

3

0

4

2279

 

 

 

14

0

7

2279

1

 

 

 

15

2279

0

2

11

 

Source:

 

16

35

1

21

2279

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

533

827

346

573

 

 

 

 

 

 

 

 

 

 

 

 

SOX8_5

 

 

 

 

A

C

G

T

 

Name

SOX8

1

0

0

4

998

 

TF group

HMG

2

4

0

998

1

 

Polypeptide used

DBD

3

998

1

1

1

 

Ligand sequence

TCTTTC30NTTG

4

998

0

2

0

 

Batch of SELEX experiment

AI

5

1

0

0

998

 

Seed sequence

TGAATRTKCAGWCA

6

319

4

679

5

 

Hamming distance of sequences to seed

1

7

0

0

12

998

 

SELEX cycle

4

8

83

76

635

364

 

Number of repeats

dimeric

9

2

998

2

0

 

Comment

possible binding to single stranded DNA

10

998

1

1

0

 

Representative matrix

no

11

0

0

998

8

 

 

 

12

1

2

2

997

 

Source:

 

13

0

998

1

5

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

998

0

1

1

 

 

 

 

 

 

 

 

 

 

 

 

SOX8_6

 

 

 

 

A

C

G

T

 

Name

SOX8

1

456

0

5

0

 

TF group

HMG

2

456

0

22

0

 

Polypeptide used

full

3

0

456

0

0

 

Ligand sequence

TGTCTA20NTCG

4

456

0

0

0

 

Batch of SELEX experiment

AE

5

456

0

0

0

 

Seed sequence

AACAATKNYAGTGTT

6

0

0

0

456

 

Hamming distance of sequences to seed

1

7

0

0

15

441

 

SELEX cycle

4

8

88

51

252

65

 

Number of repeats

dimeric

9

0

441

0

15

 

Comment

possible binding to single stranded DNA

10

456

0

0

0

 

Representative matrix

no

11

0

0

456

0

 

 

 

12

0

0

0

456

 

 

 

13

0

0

456

0

 

Source:

 

14

0

0

0

456

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

0

0

0

456

 

 

 

 

 

 

 

 

 

 

 

 

SOX8_7

 

 

 

 

A

C

G

T

 

Name

SOX8

1

619

0

112

5

 

TF group

HMG

2

5

0

0

619

 

Polypeptide used

full

3

0

0

619

0

 

Ligand sequence

TGTCTA20NTCG

4

619

0

0

0

 

Batch of SELEX experiment

AE

5

619

0

0

0

 

Seed sequence

ATGAATKNYAGTC

6

0

0

0

619

 

Hamming distance of sequences to seed

1

7

0

0

98

521

 

SELEX cycle

4

8

55

72

331

162

 

Number of repeats

dimeric

9

0

516

0

104

 

Comment

possible binding to single stranded DNA

10

619

0

0

0

 

Representative matrix

no

11

0

0

619

68

 

 

 

12

0

0

0

619

 

Source:

 

13

0

619

0

0

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

SOX8_8

 

 

 

 

A

C

G

T

 

Name

SOX8

1

121

64

0

15

 

TF group

HMG

2

200

0

0

0

 

Polypeptide used

full

3

0

0

0

200

 

Ligand sequence

TGTCTA20NTCG

4

0

200

0

0

 

Batch of SELEX experiment

AE

5

200

0

0

0

 

Seed sequence

NATCAATKNYAGTGATN

6

200

0

0

0

 

Hamming distance of sequences to seed

1

7

0

0

0

200

 

SELEX cycle

4

8

0

0

47

152

 

Number of repeats

dimeric

9

6

0

169

25

 

Comment

possible binding to single stranded DNA

10

0

164

0

36

 

Representative matrix

no

11

200

0

0

0

 

 

 

12

0

0

200

32

 

 

 

13

0

0

0

200

 

 

 

14

0

0

200

0

 

 

 

15

200

0

0

0

 

Source:

 

16

6

0

0

200

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

6

0

71

123