SOX7_1

 

 

 

 

A

C

G

T

 

Name

SOX7

1

282

1

1

0

 

TF group

HMG

2

282

1

0

0

 

Polypeptide used

full

3

1

282

0

0

 

Ligand sequence

TGAGGC20NGGA

4

282

0

0

0

 

Batch of SELEX experiment

AF

5

282

0

12

1

 

Seed sequence

AACAATNNNNAKTGTT

6

0

1

0

282

 

Hamming distance of sequences to seed

1

7

103

5

129

45

 

SELEX cycle

3

8

74

11

44

153

 

Number of repeats

dimeric

9

48

51

79

104

 

Comment

possible binding to single stranded DNA

10

55

164

5

58

 

Representative matrix

yes

11

282

0

0

1

 

 

 

12

1

0

105

177

 

 

 

13

2

0

0

282

 

 

 

14

1

0

282

0

 

Source:

 

15

1

1

1

282

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

2

2

2

282

 

 

 

 

 

 

 

 

 

 

 

 

SOX7_2

 

 

 

 

A

C

G

T

 

Name

SOX7

1

1665

252

840

499

 

TF group

HMG

2

3256

0

4

2

 

Polypeptide used

full

3

3256

0

7

1

 

Ligand sequence

TGAGGC20NGGA

4

1

3256

0

0

 

Batch of SELEX experiment

AF

5

3256

0

0

0

 

Seed sequence

NAACAATKNYAKTGTTN

6

3256

2

37

1

 

Hamming distance of sequences to seed

1

7

1

2

0

3256

 

SELEX cycle

3

8

105

8

1282

1974

 

Number of repeats

dimeric

9

767

205

1160

1124

 

Comment

possible binding to single stranded DNA

10

2

2082

5

1175

 

Representative matrix

no

11

3256

0

0

2

 

 

 

12

0

1

1543

1713

 

 

 

13

5

1

11

3256

 

 

 

14

1

0

3256

1

 

 

 

15

4

3

3

3256

 

Source:

 

16

19

34

11

3256

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

683

660

542

1372

 

 

 

 

 

 

 

 

 

 

 

 

SOX7_3

 

 

 

 

A

C

G

T

 

Name

SOX7

1

52

35

69

53

 

TF group

HMG

2

210

0

4

4

 

Polypeptide used

full

3

1

0

0

210

 

Ligand sequence

TGAGGC20NGGA

4

12

0

210

0

 

Batch of SELEX experiment

AF

5

210

0

0

1

 

Seed sequence

NATGAATKNYAKTCATN

6

210

0

3

0

 

Hamming distance of sequences to seed

1

7

0

1

0

210

 

SELEX cycle

3

8

4

0

52

158

 

Number of repeats

dimeric

9

34

16

72

87

 

Comment

possible binding to single stranded DNA

10

0

158

0

52

 

Representative matrix

no

11

210

0

0

0

 

 

 

12

0

0

113

97

 

 

 

13

0

0

0

210

 

 

 

14

0

210

0

0

 

 

 

15

210

0

0

2

 

Source:

 

16

14

2

2

210

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

64

32

67

47