|
|
SOX21_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
SOX21 |
|
1 |
15806 |
83 |
199 |
106 |
|
TF group |
HMG |
|
2 |
15806 |
250 |
2008 |
232 |
|
Polypeptide used |
DBD |
|
3 |
15 |
15806 |
28 |
24 |
|
Ligand sequence |
TCAAAA40NAAA |
|
4 |
15806 |
7 |
22 |
1 |
|
Batch of SELEX experiment |
AI |
|
5 |
15806 |
13 |
56 |
0 |
|
Seed sequence |
AACAATNNNAKTGTT |
|
6 |
6 |
3 |
30 |
15806 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
348 |
15 |
9624 |
5819 |
|
SELEX cycle |
4 |
|
8 |
1909 |
1271 |
7901 |
4725 |
|
Number of repeats |
dimeric |
|
9 |
128 |
7221 |
73 |
8384 |
|
Comment |
possible binding to single stranded DNA |
|
10 |
15806 |
20 |
40 |
1 |
|
Representative matrix |
no |
|
11 |
64 |
9 |
10733 |
5073 |
|
|
|
|
12 |
84 |
15 |
77 |
15806 |
|
|
|
|
13 |
10 |
4 |
15806 |
8 |
|
Source: |
|
|
14 |
33 |
17 |
37 |
15806 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
279 |
790 |
484 |
15806 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
SOX21_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
SOX21 |
|
1 |
888 |
2 |
10 |
19 |
|
TF group |
HMG |
|
2 |
888 |
13 |
147 |
23 |
|
Polypeptide used |
DBD |
|
3 |
4 |
888 |
5 |
1 |
|
Ligand sequence |
TCAAAA40NAAA |
|
4 |
888 |
0 |
1 |
1 |
|
Batch of SELEX experiment |
AI |
|
5 |
888 |
0 |
1 |
0 |
|
Seed sequence |
AACAATNNNNAKTGTT |
|
6 |
0 |
1 |
0 |
888 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
279 |
41 |
441 |
128 |
|
SELEX cycle |
4 |
|
8 |
106 |
27 |
342 |
413 |
|
Number of repeats |
dimeric |
|
9 |
178 |
84 |
411 |
216 |
|
Comment |
possible binding to single stranded DNA |
|
10 |
46 |
465 |
23 |
353 |
|
Representative
matrix |
no |
|
11 |
888 |
1 |
4 |
0 |
|
|
|
|
12 |
0 |
3 |
616 |
272 |
|
|
|
|
13 |
4 |
1 |
0 |
888 |
|
|
|
|
14 |
0 |
2 |
888 |
0 |
|
Source: |
|
|
15 |
6 |
3 |
10 |
888 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
16 |
24 |
70 |
37 |
888 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
SOX21_3 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
SOX21 |
|
1 |
221 |
28 |
93 |
1329 |
|
TF group |
HMG |
|
2 |
0 |
1329 |
14 |
17 |
|
Polypeptide used |
DBD |
|
3 |
1329 |
1 |
5 |
4 |
|
Ligand sequence |
TCAAAA40NAAA |
|
4 |
1329 |
16 |
8 |
1 |
|
Batch of SELEX experiment |
AI |
|
5 |
3 |
0 |
0 |
1329 |
|
Seed sequence |
TCAATNNNATTGA |
|
6 |
142 |
0 |
1058 |
131 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
204 |
155 |
416 |
554 |
|
SELEX cycle |
4 |
|
8 |
29 |
342 |
16 |
943 |
|
Number of repeats |
dimeric |
|
9 |
1329 |
6 |
7 |
0 |
|
Comment |
possible binding to single stranded DNA |
|
10 |
0 |
1 |
638 |
1329 |
|
Representative matrix |
no |
|
11 |
0 |
0 |
3 |
1329 |
|
|
|
|
12 |
1 |
0 |
1329 |
6 |
|
Source: |
|
|
13 |
1329 |
17 |
66 |
400 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX21_4 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
SOX21 |
|
1 |
141 |
22 |
85 |
5839 |
|
TF group |
HMG |
|
2 |
59 |
0 |
5839 |
0 |
|
Polypeptide used |
DBD |
|
3 |
5839 |
3 |
17 |
0 |
|
Ligand sequence |
TCAAAA40NAAA |
|
4 |
5839 |
0 |
11 |
0 |
|
Batch of SELEX experiment |
AI |
|
5 |
8 |
3 |
12 |
5839 |
|
Seed sequence |
TGAATNNNAKTCA |
|
6 |
222 |
9 |
4460 |
1148 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
745 |
531 |
2202 |
2361 |
|
SELEX cycle |
4 |
|
8 |
69 |
1920 |
42 |
3808 |
|
Number of repeats |
dimeric |
|
9 |
5839 |
11 |
26 |
6 |
|
Comment |
possible binding to single stranded DNA |
|
10 |
0 |
0 |
1796 |
4042 |
|
Representative
matrix |
no |
|
11 |
1 |
4 |
0 |
5839 |
|
|
|
|
12 |
24 |
5839 |
23 |
0 |
|
Source: |
|
|
13 |
5839 |
38 |
125 |
12 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|