SOX18_1

 

 

 

 

A

C

G

T

 

Name

SOX18

1

2532

13

46

0

 

TF group

HMG

2

2532

0

24

5

 

Polypeptide used

full

3

0

2532

0

0

 

Ligand sequence

TGTGTC20NTGG

4

2532

7

0

0

 

Batch of SELEX experiment

AE

5

2532

71

21

0

 

Seed sequence

AACAATNNCATTGTT

6

0

0

0

2532

 

Hamming distance of sequences to seed

1

7

596

59

525

1352

 

SELEX cycle

4

8

418

367

861

886

 

Number of repeats

dimeric

9

85

2532

16

67

 

Comment

possible binding to single stranded DNA

10

2532

0

0

8

 

Representative matrix

no

11

8

0

284

2532

 

 

 

12

8

0

8

2532

 

 

 

13

0

0

2532

0

 

Source:

 

14

8

0

6

2532

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

20

32

32

2532

 

 

 

 

 

 

 

 

 

 

 

 

SOX18_2

 

 

 

 

A

C

G

T

 

Name

SOX18

1

298

14

31

6

 

TF group

HMG

2

8

0

0

298

 

Polypeptide used

full

3

0

298

0

0

 

Ligand sequence

TGTGTC20NTGG

4

298

0

0

0

 

Batch of SELEX experiment

AE

5

298

0

0

0

 

Seed sequence

ATCAATNNCATTGAT

6

0

0

0

298

 

Hamming distance of sequences to seed

1

7

96

7

15

180

 

SELEX cycle

4

8

51

36

132

78

 

Number of repeats

dimeric

9

0

298

0

15

 

Comment

possible binding to single stranded DNA

10

298

0

0

0

 

Representative matrix

yes

11

0

0

44

298

 

 

 

12

0

0

0

298

 

 

 

13

0

0

298

0

 

Source:

 

14

298

0

6

5

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

13

0

8

298

 

 

 

 

 

 

 

 

 

 

 

 

SOX18_3

 

 

 

 

A

C

G

T

 

Name

SOX18

1

499

0

0

12

 

TF group

HMG

2

8

0

0

499

 

Polypeptide used

full

3

16

0

499

0

 

Ligand sequence

TGTGTC20NTGG

4

499

0

0

0

 

Batch of SELEX experiment

AE

5

499

8

8

0

 

Seed sequence

ATGAATWYCATTCAT

6

0

0

0

499

 

Hamming distance of sequences to seed

1

7

144

0

54

355

 

SELEX cycle

4

8

42

290

66

209

 

Number of repeats

dimeric

9

0

499

0

12

 

Comment

possible binding to single stranded DNA

10

499

0

0

0

 

Representative matrix

no

11

0

0

47

499

 

 

 

12

0

0

0

499

 

 

 

13

0

499

0

0

 

Source:

 

14

499

0

8

0

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

27

0

0

499