|
SOX15_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX15 |
1 |
379 |
45 |
3 |
0 |
|
TF group |
HMG |
2 |
379 |
0 |
0 |
0 |
|
Polypeptide used |
full |
3 |
0 |
379 |
3 |
0 |
|
Ligand sequence |
TGTTCA20NCTG |
4 |
379 |
0 |
0 |
3 |
|
Batch of SELEX experiment |
AF |
5 |
379 |
65 |
0 |
0 |
|
Seed sequence |
AACAATAMCATTGTT |
6 |
0 |
0 |
0 |
379 |
|
Hamming distance of sequences to seed |
1 |
7 |
379 |
0 |
12 |
6 |
|
SELEX cycle |
4 |
8 |
231 |
148 |
28 |
13 |
|
Number of repeats |
dimeric |
9 |
0 |
379 |
0 |
0 |
|
Comment |
possible binding to single stranded DNA |
10 |
379 |
0 |
0 |
0 |
|
Representative
matrix |
no |
11 |
0 |
0 |
0 |
379 |
|
|
|
12 |
0 |
0 |
0 |
379 |
|
|
|
13 |
0 |
0 |
379 |
0 |
|
Source: |
|
14 |
0 |
9 |
3 |
379 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
2 |
0 |
0 |
379 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX15_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX15 |
1 |
88 |
28 |
0 |
3 |
|
TF group |
HMG |
2 |
0 |
3 |
0 |
88 |
|
Polypeptide used |
full |
3 |
0 |
88 |
0 |
0 |
|
Ligand sequence |
TGTTCA20NCTG |
4 |
88 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
88 |
3 |
0 |
0 |
|
Seed sequence |
ATCAATAACATTGAT |
6 |
0 |
0 |
0 |
88 |
|
Hamming distance of sequences to seed |
1 |
7 |
88 |
0 |
0 |
5 |
|
SELEX cycle |
4 |
8 |
88 |
37 |
0 |
6 |
|
Number of repeats |
dimeric |
9 |
0 |
88 |
0 |
0 |
|
Comment |
possible binding to single stranded DNA; < 100
counts |
10 |
88 |
0 |
0 |
0 |
|
Representative matrix |
no |
11 |
0 |
0 |
0 |
88 |
|
|
|
12 |
0 |
0 |
0 |
88 |
|
|
|
13 |
0 |
0 |
88 |
0 |
|
Source: |
|
14 |
88 |
0 |
0 |
0 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
5 |
8 |
0 |
88 |
|
|
|
|
|
|
|
|
|
|
|
|
SOX15_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
SOX15 |
1 |
693 |
52 |
6 |
12 |
|
TF group |
HMG |
2 |
0 |
0 |
0 |
693 |
|
Polypeptide used |
full |
3 |
0 |
0 |
693 |
0 |
|
Ligand sequence |
TGTTCA20NCTG |
4 |
693 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
AF |
5 |
693 |
22 |
6 |
0 |
|
Seed sequence |
ATGAATAACATTCAT |
6 |
0 |
0 |
0 |
693 |
|
Hamming distance of sequences to seed |
1 |
7 |
693 |
0 |
22 |
8 |
|
SELEX cycle |
4 |
8 |
693 |
95 |
51 |
96 |
|
Number of repeats |
dimeric |
9 |
0 |
693 |
0 |
0 |
|
Comment |
possible binding to single stranded DNA |
10 |
693 |
0 |
0 |
0 |
|
Representative
matrix |
no |
11 |
0 |
0 |
0 |
693 |
|
|
|
12 |
0 |
0 |
0 |
693 |
|
|
|
13 |
0 |
693 |
0 |
7 |
|
Source: |
|
14 |
693 |
0 |
0 |
2 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
15 |
0 |
10 |
6 |
693 |
|
|
|