SOX15_1

 

 

 

 

A

C

G

T

 

Name

SOX15

1

379

45

3

0

 

TF group

HMG

2

379

0

0

0

 

Polypeptide used

full

3

0

379

3

0

 

Ligand sequence

TGTTCA20NCTG

4

379

0

0

3

 

Batch of SELEX experiment

AF

5

379

65

0

0

 

Seed sequence

AACAATAMCATTGTT

6

0

0

0

379

 

Hamming distance of sequences to seed

1

7

379

0

12

6

 

SELEX cycle

4

8

231

148

28

13

 

Number of repeats

dimeric

9

0

379

0

0

 

Comment

possible binding to single stranded DNA

10

379

0

0

0

 

Representative matrix

no

11

0

0

0

379

 

 

 

12

0

0

0

379

 

 

 

13

0

0

379

0

 

Source:

 

14

0

9

3

379

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

2

0

0

379

 

 

 

 

 

 

 

 

 

 

 

 

SOX15_2

 

 

 

 

A

C

G

T

 

Name

SOX15

1

88

28

0

3

 

TF group

HMG

2

0

3

0

88

 

Polypeptide used

full

3

0

88

0

0

 

Ligand sequence

TGTTCA20NCTG

4

88

0

0

0

 

Batch of SELEX experiment

AF

5

88

3

0

0

 

Seed sequence

ATCAATAACATTGAT

6

0

0

0

88

 

Hamming distance of sequences to seed

1

7

88

0

0

5

 

SELEX cycle

4

8

88

37

0

6

 

Number of repeats

dimeric

9

0

88

0

0

 

Comment

possible binding to single stranded DNA; < 100 counts

10

88

0

0

0

 

Representative matrix

no

11

0

0

0

88

 

 

 

12

0

0

0

88

 

 

 

13

0

0

88

0

 

Source:

 

14

88

0

0

0

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

5

8

0

88

 

 

 

 

 

 

 

 

 

 

 

 

SOX15_3

 

 

 

 

A

C

G

T

 

Name

SOX15

1

693

52

6

12

 

TF group

HMG

2

0

0

0

693

 

Polypeptide used

full

3

0

0

693

0

 

Ligand sequence

TGTTCA20NCTG

4

693

0

0

0

 

Batch of SELEX experiment

AF

5

693

22

6

0

 

Seed sequence

ATGAATAACATTCAT

6

0

0

0

693

 

Hamming distance of sequences to seed

1

7

693

0

22

8

 

SELEX cycle

4

8

693

95

51

96

 

Number of repeats

dimeric

9

0

693

0

0

 

Comment

possible binding to single stranded DNA

10

693

0

0

0

 

Representative matrix

no

11

0

0

0

693

 

 

 

12

0

0

0

693

 

 

 

13

0

693

0

7

 

Source:

 

14

693

0

0

2

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

0

10

6

693