SOX10_1

 

 

 

 

A

C

G

T

 

Name

SOX10

1

6399

10

3

3

 

TF group

HMG

2

6399

2

89

0

 

Polypeptide used

full

3

5

6399

3

0

 

Ligand sequence

TGATTT20NTTA

4

6399

0

0

0

 

Batch of SELEX experiment

AF

5

6399

3

0

0

 

Seed sequence

AACAATNNNAGTGTT

6

0

3

0

6399

 

Hamming distance of sequences to seed

1

7

3

0

1085

5311

 

SELEX cycle

4

8

218

474

3710

1996

 

Number of repeats

dimeric

9

2

5339

2

1056

 

Comment

possible binding to single stranded DNA

10

6399

0

0

0

 

Representative matrix

no

11

2

0

6399

6

 

 

 

12

3

5

2

6399

 

 

 

13

3

0

6399

0

 

Source:

 

14

0

0

0

6399

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

5

27

0

6399

 

 

 

 

 

 

 

 

 

 

 

 

SOX10_2

 

 

 

 

A

C

G

T

 

Name

SOX10

1

282

0

0

0

 

TF group

HMG

2

282

0

0

0

 

Polypeptide used

full

3

0

282

0

0

 

Ligand sequence

TGATTT20NTTA

4

282

0

0

0

 

Batch of SELEX experiment

AF

5

282

3

0

0

 

Seed sequence

AACAATRTKCAGWGTT

6

0

0

0

282

 

Hamming distance of sequences to seed

1

7

92

0

190

0

 

SELEX cycle

4

8

0

0

0

282

 

Number of repeats

dimeric

9

0

15

132

150

 

Comment

possible binding to single stranded DNA

10

0

282

0

0

 

Representative matrix

yes

11

282

0

0

0

 

 

 

12

0

0

282

0

 

 

 

13

0

0

0

282

 

 

 

14

0

0

282

0

 

Source:

 

15

0

0

0

282

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

0

0

3

282

 

 

 

 

 

 

 

 

 

 

 

 

SOX10_3

 

 

 

 

A

C

G

T

 

Name

SOX10

1

786

0

0

0

 

TF group

HMG

2

0

0

0

786

 

Polypeptide used

full

3

0

786

0

3

 

Ligand sequence

TGATTT20NTTA

4

786

0

0

0

 

Batch of SELEX experiment

AF

5

786

0

0

0

 

Seed sequence

ATCAATTGCAGTGAT

6

0

0

0

786

 

Hamming distance of sequences to seed

1

7

0

0

21

786

 

SELEX cycle

4

8

112

149

786

558

 

Number of repeats

dimeric

9

0

786

0

35

 

Comment

possible binding to single stranded DNA

10

786

0

0

0

 

Representative matrix

no

11

0

0

786

10

 

 

 

12

0

0

0

786

 

 

 

13

0

3

786

0

 

Source:

 

14

786

0

0

0

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

0

0

0

786

 

 

 

 

 

 

 

 

 

 

 

 

SOX10_4

 

 

 

 

A

C

G

T

 

Name

SOX10

1

4390

13

5

10

 

TF group

HMG

2

0

3

0

4390

 

Polypeptide used

full

3

5

3

4390

3

 

Ligand sequence

TGATTT20NTTA

4

4390

5

3

0

 

Batch of SELEX experiment

AF

5

4390

0

8

0

 

Seed sequence

ATGAATTGCAGTCAT

6

0

0

0

4390

 

Hamming distance of sequences to seed

1

7

0

3

31

4390

 

SELEX cycle

4

8

595

295

4390

1990

 

Number of repeats

dimeric

9

3

4390

0

24

 

Comment

possible binding to single stranded DNA

10

4390

0

3

0

 

Representative matrix

no

11

0

0

4390

10

 

 

 

12

0

0

0

4390

 

 

 

13

0

4390

0

3

 

Source:

 

14

4390

0

3

0

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

2

0

19

4390

 

 

 

 

 

 

 

 

 

 

 

 

SOX10_5

 

 

 

 

A

C

G

T

 

Name

SOX10

1

0

0

0

701

 

TF group

HMG

2

0

3

701

0

 

Polypeptide used

full

3

701

0

0

0

 

Ligand sequence

TGATTT20NTTA

4

701

0

0

0

 

Batch of SELEX experiment

AF

5

0

0

0

701

 

Seed sequence

TGAATRTKCAGTCA

6

167

0

533

6

 

Hamming distance of sequences to seed

1

7

0

0

0

701

 

SELEX cycle

4

8

12

15

258

442

 

Number of repeats

dimeric

9

0

701

0

0

 

Comment

possible binding to single stranded DNA

10

701

0

0

0

 

Representative matrix

yes

11

0

0

701

7

 

 

 

12

0

0

0

701

 

Source:

 

13

0

701

0

0

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

701

5

0

0

 

 

 

 

 

 

 

 

 

 

 

 

Sox10_6

 

 

 

 

A

C

G

T

 

Name

Sox10

1

963

0

2

0

 

TF group

HMG

2

963

0

0

0

 

Polypeptide used

DBD

3

0

963

0

0

 

Ligand sequence

TGCTGT20NCG

4

963

0

0

0

 

Batch of SELEX experiment

P

5

963

0

38

0

 

Seed sequence

AACAATTGCAGTGTT

6

0

0

0

963

 

Hamming distance of sequences to seed

1

7

3

0

1

963

 

SELEX cycle

4

8

343

397

963

1374

 

Number of repeats

dimeric

9

0

963

0

0

 

Comment

possible binding to single stranded DNA

10

963

0

1

0

 

Representative matrix

no

11

5

0

963

134

 

 

 

12

1

1

1

963

 

 

 

13

0

1

963

0

 

Source:

 

14

0

0

0

963

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

2

83

8

963

 

 

 

 

 

 

 

 

 

 

 

 

Sox10_7

 

 

 

 

A

C

G

T

 

Name

Sox10

1

2933

0

1

0

 

TF group

HMG

2

0

0

0

2933

 

Polypeptide used

DBD

3

0

2933

0

0

 

Ligand sequence

TGCTGT20NCG

4

2933

0

0

0

 

Batch of SELEX experiment

P

5

2933

0

0

0

 

Seed sequence

ATCAATTGCAGTGAT

6

0

0

0

2933

 

Hamming distance of sequences to seed

1

7

0

1

23

2933

 

SELEX cycle

4

8

544

19

2933

1106

 

Number of repeats

dimeric

9

0

2933

0

0

 

Comment

possible binding to single stranded DNA

10

2933

1

1

0

 

Representative matrix

no

11

0

1

2933

22

 

 

 

12

1

3

1

2933

 

 

 

13

1

0

2933

0

 

Source:

 

14

2933

1

2

0

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

4

7

8

2933

 

 

 

 

 

 

 

 

 

 

 

 

Sox10_8

 

 

 

 

A

C

G

T

 

Name

Sox10

1

1138

1

4

0

 

TF group

HMG

2

0

0

0

1138

 

Polypeptide used

DBD

3

0

0

1138

0

 

Ligand sequence

TGCTGT20NCG

4

1138

0

0

0

 

Batch of SELEX experiment

P

5

1138

0

0

0

 

Seed sequence

ATGAATTGCAGTCAT

6

0

0

0

1138

 

Hamming distance of sequences to seed

1

7

0

1

10

1138

 

SELEX cycle

4

8

603

115

1138

1010

 

Number of repeats

dimeric

9

0

1138

0

0

 

Comment

possible binding to single stranded DNA

10

1138

0

0

0

 

Representative matrix

no

11

0

0

1138

4

 

 

 

12

0

3

0

1138

 

 

 

13

0

1138

0

0

 

Source:

 

14

1138

0

0

0

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

38

0

0

1138