SHOX2_1

 

 

 

 

A

C

G

T

 

Name

SHOX2

1

921

2536

1142

1652

 

TF group

homeodomain

2

407

3209

143

3041

 

Polypeptide used

DBD

3

6251

318

104

323

 

Ligand sequence

TACGTC20NTGC

4

6251

87

29

30

 

Batch of SELEX experiment

Y

5

67

11

5

6251

 

Seed sequence

NYAATTAN

6

255

109

225

6251

 

Hamming distance of sequences to seed

1

7

6251

131

17

415

 

SELEX cycle

2

8

2323

903

2277

749

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

Shox2_2

 

 

 

 

A

C

G

T

 

Name

Shox2

1

2390

7695

3292

4802

 

TF group

homeodomain

2

979

9027

228

9152

 

Polypeptide used

DBD

3

18179

626

426

766

 

Ligand sequence

TCCCAG20NACC

4

18179

138

3

79

 

Batch of SELEX experiment

Z

5

29

12

0

18179

 

Seed sequence

NYAATTAN

6

597

545

870

18179

 

Hamming distance of sequences to seed

1

7

18179

193

36

895

 

SELEX cycle

2

8

6542

3021

6337

2278

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764