RXRG_1

 

 

 

 

A

C

G

T

 

Name

RXRG

1

7824

3800

21426

1886

 

TF group

nuclearreceptor

2

14207

63

20865

20

 

Polypeptide used

DBD

3

49

4

23554

77

 

Ligand sequence

TGGAAT20NGA

4

102

9

22312

3946

 

Batch of SELEX experiment

Y

5

5

35

126

39123

 

Seed sequence

GGGGTCAAAGGTCA

6

28

56980

734

3942

 

Hamming distance of sequences to seed

2

7

37922

0

76

4

 

SELEX cycle

3

8

34468

14

970

574

 

Number of repeats

dimeric

9

33003

0

1634

5

 

Comment

 

10

9

1

29532

20

 

Representative matrix

no

11

12

1

27903

3913

 

 

 

12

2

17

134

37558

 

Source:

 

13

78

49963

935

2999

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

36677

43

2323

27

 

 

 

 

 

 

 

 

 

 

 

 

RXRG_2

 

 

 

 

A

C

G

T

 

Name

RXRG

1

1333

172

2068

42

 

TF group

nuclearreceptor

2

1826

3

1751

0

 

Polypeptide used

DBD

3

5

16

4503

28

 

Ligand sequence

TGGAAT20NGA

4

0

23

4463

144

 

Batch of SELEX experiment

Y

5

1

3

15

2595

 

Seed sequence

RRGGTCATGACCYY

6

2

2075

1

16

 

Hamming distance of sequences to seed

2

7

2992

1

371

0

 

SELEX cycle

3

8

0

184

0

2646

 

Number of repeats

dimeric

9

15

0

5085

0

 

Comment

 

10

3091

2

0

0

 

Representative matrix

no

11

91

1554

1

0

 

 

 

12

3

1608

1

0

 

Source:

 

13

2

1238

1

903

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

18

1304

147

685

 

 

 

 

 

 

 

 

 

 

 

 

RXRG_3

 

 

 

 

A

C

G

T

 

Name

RXRG

1

124

21

441

1

 

TF group

nuclearreceptor

2

160

0

442

0

 

Polypeptide used

full

3

0

0

477

1

 

Ligand sequence

TTCTCT20NTA

4

0

0

471

12

 

Batch of SELEX experiment

AD

5

0

1

1

620

 

Seed sequence

GGGGTCAAAGGTCA

6

1

1008

1

5

 

Hamming distance of sequences to seed

2

7

710

1

0

1

 

SELEX cycle

4

8

707

1

2

1

 

Number of repeats

dimeric

9

705

1

1

1

 

Comment

 

10

1

1

486

1

 

Representative matrix

no

11

1

0

480

9

 

 

 

12

1

0

1

642

 

Source:

 

13

0

983

1

8

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

734

0

5

0