|
|
RXRB_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
RXRB |
|
1 |
1430 |
342 |
3156 |
224 |
|
TF group |
nuclearreceptor |
|
2 |
1659 |
8 |
3737 |
3 |
|
Polypeptide used |
DBD |
|
3 |
14 |
1 |
3955 |
10 |
|
Ligand sequence |
TGAGCA20NGA |
|
4 |
1 |
0 |
3642 |
492 |
|
Batch of SELEX experiment |
Y |
|
5 |
0 |
2 |
11 |
4481 |
|
Seed sequence |
GGGGTCAAAGGTCA |
|
6 |
37 |
7053 |
112 |
350 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
5823 |
0 |
12 |
1 |
|
SELEX cycle |
3 |
|
8 |
5820 |
5 |
119 |
31 |
|
Number of repeats |
dimeric |
|
9 |
5729 |
1 |
221 |
0 |
|
Comment |
|
|
10 |
1 |
0 |
3867 |
7 |
|
Representative matrix |
no |
|
11 |
2 |
0 |
3745 |
312 |
|
|
|
|
12 |
1 |
2 |
19 |
4431 |
|
Source: |
|
|
13 |
16 |
7053 |
102 |
184 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
5738 |
13 |
299 |
3 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Rxrb_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Rxrb |
|
1 |
94 |
36 |
436 |
26 |
|
TF group |
nuclearreceptor |
|
2 |
158 |
0 |
442 |
0 |
|
Polypeptide used |
DBD |
|
3 |
0 |
0 |
483 |
0 |
|
Ligand sequence |
CAATT14N |
|
4 |
0 |
0 |
479 |
20 |
|
Batch of SELEX experiment |
T |
|
5 |
0 |
0 |
2 |
453 |
|
Seed sequence |
GGGGTCAAAGGTCA |
|
6 |
2 |
680 |
9 |
74 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
533 |
0 |
0 |
0 |
|
SELEX cycle |
4 |
|
8 |
508 |
0 |
11 |
9 |
|
Number of repeats |
dimeric |
|
9 |
502 |
0 |
26 |
0 |
|
Comment |
|
|
10 |
0 |
0 |
518 |
0 |
|
Representative
matrix |
no |
|
11 |
0 |
0 |
491 |
14 |
|
|
|
|
12 |
0 |
0 |
1 |
452 |
|
Source: |
|
|
13 |
0 |
656 |
21 |
47 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
529 |
0 |
29 |
0 |
|
|
|