|
RXRA_1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RXRA |
1 |
38994 |
15029 |
95913 |
7042 |
|
TF group |
nuclearreceptor |
2 |
68484 |
478 |
90251 |
117 |
|
Polypeptide used |
DBD |
3 |
213 |
154 |
120416 |
383 |
|
Ligand sequence |
TCACGT30NGCA |
4 |
333 |
104 |
114145 |
14050 |
|
Batch of SELEX experiment |
AH |
5 |
75 |
262 |
1100 |
99900 |
|
Seed sequence |
GGGGTCAAAGGTCA |
6 |
134 |
119096 |
2754 |
9897 |
|
Hamming distance of sequences to seed |
2 |
7 |
88743 |
100 |
442 |
25 |
|
SELEX cycle |
3 |
8 |
87714 |
176 |
2410 |
996 |
|
Number of repeats |
dimeric |
9 |
87807 |
106 |
3970 |
50 |
|
Comment |
|
10 |
70 |
57 |
119892 |
102 |
|
Representative matrix |
no |
11 |
117 |
72 |
113964 |
11036 |
|
|
|
12 |
94 |
193 |
930 |
98103 |
|
Source: |
|
13 |
245 |
122038 |
2431 |
8621 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
87488 |
238 |
7573 |
120 |
|
|
|
|
|
|
|
|
|
|
|
|
RXRA_2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RXRA |
1 |
2908 |
552 |
5711 |
258 |
|
TF group |
nuclearreceptor |
2 |
4055 |
117 |
4473 |
75 |
|
Polypeptide used |
DBD |
3 |
99 |
215 |
10330 |
199 |
|
Ligand sequence |
TCACGT30NGCA |
4 |
131 |
220 |
10048 |
622 |
|
Batch of SELEX experiment |
AH |
5 |
101 |
226 |
254 |
9355 |
|
Seed sequence |
RRGGTCATGACCYY |
6 |
70 |
11448 |
240 |
276 |
|
Hamming distance of sequences to seed |
2 |
7 |
6659 |
81 |
1276 |
76 |
|
SELEX cycle |
3 |
8 |
115 |
1451 |
58 |
8622 |
|
Number of repeats |
dimeric |
9 |
215 |
171 |
10302 |
116 |
|
Comment |
|
10 |
7165 |
166 |
240 |
227 |
|
Representative matrix |
no |
11 |
641 |
11274 |
252 |
210 |
|
|
|
12 |
358 |
11743 |
320 |
204 |
|
Source: |
|
13 |
153 |
5894 |
220 |
4613 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
287 |
6724 |
729 |
3500 |
|
|
|
|
|
|
|
|
|
|
|
|
RXRA_3 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RXRA |
1 |
12568 |
5031 |
30811 |
2084 |
|
TF group |
nuclearreceptor |
2 |
21345 |
200 |
30406 |
75 |
|
Polypeptide used |
full |
3 |
110 |
77 |
38290 |
159 |
|
Ligand sequence |
TCTACA40NCAG |
4 |
132 |
72 |
36414 |
4372 |
|
Batch of SELEX experiment |
AI |
5 |
47 |
109 |
372 |
40596 |
|
Seed sequence |
GGGGTCAAAGGTCA |
6 |
97 |
44342 |
577 |
2686 |
|
Hamming distance of sequences to seed |
2 |
7 |
46204 |
51 |
120 |
21 |
|
SELEX cycle |
3 |
8 |
45275 |
89 |
830 |
368 |
|
Number of repeats |
dimeric |
9 |
45265 |
73 |
1369 |
19 |
|
Comment |
|
10 |
39 |
71 |
39798 |
51 |
|
Representative matrix |
no |
11 |
63 |
85 |
38185 |
3335 |
|
|
|
12 |
44 |
114 |
267 |
39867 |
|
Source: |
|
13 |
63 |
43686 |
348 |
1775 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
44403 |
158 |
2447 |
37 |
|
|
|
|
|
|
|
|
|
|
|
|
RXRA_4 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RXRA |
1 |
2763 |
436 |
4899 |
290 |
|
TF group |
nuclearreceptor |
2 |
3819 |
114 |
3813 |
51 |
|
Polypeptide used |
full |
3 |
198 |
150 |
9461 |
162 |
|
Ligand sequence |
TCTACA40NCAG |
4 |
138 |
121 |
9283 |
668 |
|
Batch of SELEX experiment |
AI |
5 |
150 |
182 |
372 |
9468 |
|
Seed sequence |
RRGGTCATGACCYY |
6 |
75 |
6257 |
257 |
161 |
|
Hamming distance of sequences to seed |
2 |
7 |
6129 |
16 |
1045 |
90 |
|
SELEX cycle |
3 |
8 |
78 |
1046 |
45 |
8601 |
|
Number of repeats |
dimeric |
9 |
162 |
110 |
9700 |
72 |
|
Comment |
|
10 |
6559 |
117 |
109 |
76 |
|
Representative
matrix |
no |
11 |
415 |
5875 |
108 |
65 |
|
|
|
12 |
110 |
6043 |
94 |
113 |
|
Source: |
|
13 |
49 |
4066 |
98 |
3131 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
201 |
4324 |
498 |
2313 |
|
|
|
|
|
|
|
|
|
|
|
|
Rxra_5 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Rxra |
1 |
3250 |
980 |
6214 |
687 |
|
TF group |
nuclearreceptor |
2 |
3947 |
64 |
6945 |
2 |
|
Polypeptide used |
DBD |
3 |
67 |
6 |
7798 |
49 |
|
Ligand sequence |
AAGAC14N |
4 |
61 |
2 |
7329 |
1273 |
|
Batch of SELEX experiment |
T |
5 |
2 |
18 |
141 |
7024 |
|
Seed sequence |
GGGGTCAAAGGTCA |
6 |
13 |
8704 |
624 |
927 |
|
Hamming distance of sequences to seed |
2 |
7 |
7704 |
0 |
52 |
1 |
|
SELEX cycle |
4 |
8 |
6811 |
10 |
242 |
234 |
|
Number of repeats |
dimeric |
9 |
6349 |
5 |
675 |
1 |
|
Comment |
|
10 |
10 |
0 |
9237 |
21 |
|
Representative matrix |
no |
11 |
32 |
1 |
8321 |
1124 |
|
|
|
12 |
5 |
23 |
170 |
7332 |
|
Source: |
|
13 |
103 |
6839 |
901 |
1058 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
14 |
7750 |
111 |
761 |
83 |
|
|
|
|
|
|
|
|
|
|
|
|
Rxra_6 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
Rxra |
1 |
899 |
1 |
1513 |
0 |
|
TF group |
nuclearreceptor |
2 |
2 |
0 |
2810 |
1 |
|
Polypeptide used |
DBD |
3 |
0 |
2 |
2588 |
105 |
|
Ligand sequence |
AAGAC14N |
4 |
3 |
4 |
24 |
2018 |
|
Batch of SELEX experiment |
T |
5 |
0 |
2113 |
9 |
26 |
|
Seed sequence |
RGGTCATGACCY |
6 |
1681 |
0 |
539 |
2 |
|
Hamming distance of sequences to seed |
2 |
7 |
1 |
193 |
3 |
2230 |
|
SELEX cycle |
4 |
8 |
11 |
0 |
3561 |
4 |
|
Number of repeats |
dimeric |
9 |
1925 |
6 |
2 |
2 |
|
Comment |
|
10 |
70 |
1709 |
16 |
3 |
|
Representative matrix |
yes |
11 |
1 |
1701 |
15 |
0 |
|
|
|
12 |
2 |
1179 |
1 |
646 |
|
Source: |
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |