RXRA_1

 

 

 

 

A

C

G

T

 

Name

RXRA

1

38994

15029

95913

7042

 

TF group

nuclearreceptor

2

68484

478

90251

117

 

Polypeptide used

DBD

3

213

154

120416

383

 

Ligand sequence

TCACGT30NGCA

4

333

104

114145

14050

 

Batch of SELEX experiment

AH

5

75

262

1100

99900

 

Seed sequence

GGGGTCAAAGGTCA

6

134

119096

2754

9897

 

Hamming distance of sequences to seed

2

7

88743

100

442

25

 

SELEX cycle

3

8

87714

176

2410

996

 

Number of repeats

dimeric

9

87807

106

3970

50

 

Comment

 

10

70

57

119892

102

 

Representative matrix

no

11

117

72

113964

11036

 

 

 

12

94

193

930

98103

 

Source:

 

13

245

122038

2431

8621

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

87488

238

7573

120

 

 

 

 

 

 

 

 

 

 

 

 

RXRA_2

 

 

 

 

A

C

G

T

 

Name

RXRA

1

2908

552

5711

258

 

TF group

nuclearreceptor

2

4055

117

4473

75

 

Polypeptide used

DBD

3

99

215

10330

199

 

Ligand sequence

TCACGT30NGCA

4

131

220

10048

622

 

Batch of SELEX experiment

AH

5

101

226

254

9355

 

Seed sequence

RRGGTCATGACCYY

6

70

11448

240

276

 

Hamming distance of sequences to seed

2

7

6659

81

1276

76

 

SELEX cycle

3

8

115

1451

58

8622

 

Number of repeats

dimeric

9

215

171

10302

116

 

Comment

 

10

7165

166

240

227

 

Representative matrix

no

11

641

11274

252

210

 

 

 

12

358

11743

320

204

 

Source:

 

13

153

5894

220

4613

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

287

6724

729

3500

 

 

 

 

 

 

 

 

 

 

 

 

RXRA_3

 

 

 

 

A

C

G

T

 

Name

RXRA

1

12568

5031

30811

2084

 

TF group

nuclearreceptor

2

21345

200

30406

75

 

Polypeptide used

full

3

110

77

38290

159

 

Ligand sequence

TCTACA40NCAG

4

132

72

36414

4372

 

Batch of SELEX experiment

AI

5

47

109

372

40596

 

Seed sequence

GGGGTCAAAGGTCA

6

97

44342

577

2686

 

Hamming distance of sequences to seed

2

7

46204

51

120

21

 

SELEX cycle

3

8

45275

89

830

368

 

Number of repeats

dimeric

9

45265

73

1369

19

 

Comment

 

10

39

71

39798

51

 

Representative matrix

no

11

63

85

38185

3335

 

 

 

12

44

114

267

39867

 

Source:

 

13

63

43686

348

1775

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

44403

158

2447

37

 

 

 

 

 

 

 

 

 

 

 

 

RXRA_4

 

 

 

 

A

C

G

T

 

Name

RXRA

1

2763

436

4899

290

 

TF group

nuclearreceptor

2

3819

114

3813

51

 

Polypeptide used

full

3

198

150

9461

162

 

Ligand sequence

TCTACA40NCAG

4

138

121

9283

668

 

Batch of SELEX experiment

AI

5

150

182

372

9468

 

Seed sequence

RRGGTCATGACCYY

6

75

6257

257

161

 

Hamming distance of sequences to seed

2

7

6129

16

1045

90

 

SELEX cycle

3

8

78

1046

45

8601

 

Number of repeats

dimeric

9

162

110

9700

72

 

Comment

 

10

6559

117

109

76

 

Representative matrix

no

11

415

5875

108

65

 

 

 

12

110

6043

94

113

 

Source:

 

13

49

4066

98

3131

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

201

4324

498

2313

 

 

 

 

 

 

 

 

 

 

 

 

Rxra_5

 

 

 

 

A

C

G

T

 

Name

Rxra

1

3250

980

6214

687

 

TF group

nuclearreceptor

2

3947

64

6945

2

 

Polypeptide used

DBD

3

67

6

7798

49

 

Ligand sequence

AAGAC14N

4

61

2

7329

1273

 

Batch of SELEX experiment

T

5

2

18

141

7024

 

Seed sequence

GGGGTCAAAGGTCA

6

13

8704

624

927

 

Hamming distance of sequences to seed

2

7

7704

0

52

1

 

SELEX cycle

4

8

6811

10

242

234

 

Number of repeats

dimeric

9

6349

5

675

1

 

Comment

 

10

10

0

9237

21

 

Representative matrix

no

11

32

1

8321

1124

 

 

 

12

5

23

170

7332

 

Source:

 

13

103

6839

901

1058

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

14

7750

111

761

83

 

 

 

 

 

 

 

 

 

 

 

 

Rxra_6

 

 

 

 

A

C

G

T

 

Name

Rxra

1

899

1

1513

0

 

TF group

nuclearreceptor

2

2

0

2810

1

 

Polypeptide used

DBD

3

0

2

2588

105

 

Ligand sequence

AAGAC14N

4

3

4

24

2018

 

Batch of SELEX experiment

T

5

0

2113

9

26

 

Seed sequence

RGGTCATGACCY

6

1681

0

539

2

 

Hamming distance of sequences to seed

2

7

1

193

3

2230

 

SELEX cycle

4

8

11

0

3561

4

 

Number of repeats

dimeric

9

1925

6

2

2

 

Comment

 

10

70

1709

16

3

 

Representative matrix

yes

11

1

1701

15

0

 

 

 

12

2

1179

1

646

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764