|
|
RUNX3_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
RUNX3 |
|
1 |
953 |
496 |
279 |
1026 |
|
TF group |
RUNX |
|
2 |
1661 |
371 |
922 |
374 |
|
Polypeptide used |
DBD |
|
3 |
2060 |
203 |
232 |
35 |
|
Ligand sequence |
TACGGA30NGGC |
|
4 |
32 |
2920 |
41 |
24 |
|
Batch of SELEX experiment |
AI |
|
5 |
31 |
2905 |
59 |
28 |
|
Seed sequence |
NAACCGCAAACCRCAN |
|
6 |
703 |
57 |
3087 |
59 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
41 |
2873 |
60 |
59 |
|
SELEX cycle |
3 |
|
8 |
2176 |
60 |
67 |
172 |
|
Number of repeats |
dimeric |
|
9 |
2061 |
64 |
536 |
72 |
|
Comment |
|
|
10 |
2173 |
150 |
199 |
52 |
|
Representative matrix |
no |
|
11 |
137 |
2836 |
94 |
58 |
|
|
|
|
12 |
82 |
2833 |
84 |
77 |
|
|
|
|
13 |
914 |
154 |
2023 |
77 |
|
|
|
|
14 |
122 |
2804 |
105 |
115 |
|
Source: |
|
|
15 |
2088 |
260 |
442 |
190 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
16 |
1189 |
364 |
761 |
415 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
RUNX3_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
RUNX3 |
|
1 |
4564 |
985 |
506 |
2667 |
|
TF group |
RUNX |
|
2 |
8723 |
764 |
2177 |
818 |
|
Polypeptide used |
DBD |
|
3 |
8723 |
196 |
284 |
22 |
|
Ligand sequence |
TACGGA30NGGC |
|
4 |
0 |
8723 |
0 |
0 |
|
Batch of SELEX experiment |
AI |
|
5 |
0 |
8723 |
2 |
0 |
|
Seed sequence |
NAACCGCAAN |
|
6 |
3780 |
54 |
8723 |
160 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
0 |
8723 |
5 |
1 |
|
SELEX cycle |
3 |
|
8 |
8723 |
160 |
603 |
207 |
|
Number of repeats |
monomeric |
|
9 |
8723 |
1134 |
2627 |
1285 |
|
Comment |
|
|
10 |
4228 |
1630 |
1373 |
1491 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
RUNX3_d2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
RUNX3 |
|
1 |
968 |
603 |
365 |
1129 |
|
TF group |
RUNX |
|
2 |
1565 |
370 |
987 |
457 |
|
Polypeptide used |
DBD |
|
3 |
1759 |
246 |
263 |
43 |
|
Ligand sequence |
TACGGA30NGGC |
|
4 |
7 |
2511 |
6 |
9 |
|
Batch of SELEX experiment |
AI |
|
5 |
2 |
2493 |
9 |
8 |
|
Seed sequence |
WAACCRCAAWAACCRCAN |
|
6 |
701 |
20 |
1865 |
60 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
23 |
2451 |
15 |
28 |
|
SELEX cycle |
3 |
|
8 |
1751 |
172 |
454 |
197 |
|
Number of repeats |
dimeric |
|
9 |
1576 |
323 |
896 |
700 |
|
Comment |
|
|
10 |
1325 |
193 |
336 |
726 |
|
Representative matrix |
no |
|
11 |
1762 |
116 |
334 |
437 |
|
|
|
|
12 |
1849 |
188 |
309 |
38 |
|
|
|
|
13 |
17 |
2425 |
23 |
28 |
|
|
|
|
14 |
22 |
2426 |
32 |
7 |
|
|
|
|
15 |
887 |
34 |
1592 |
98 |
|
|
|
|
16 |
64 |
2394 |
40 |
77 |
|
Source: |
|
|
17 |
1804 |
211 |
466 |
260 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
18 |
955 |
394 |
634 |
379 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
RUNX3_m2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
RUNX3 |
|
1 |
3952 |
1515 |
160 |
2008 |
|
TF group |
RUNX |
|
2 |
7636 |
692 |
2431 |
438 |
|
Polypeptide used |
full |
|
3 |
7636 |
331 |
273 |
0 |
|
Ligand sequence |
TCTCCC20NGA |
|
4 |
3 |
7636 |
0 |
0 |
|
Batch of SELEX experiment |
AE |
|
5 |
0 |
7636 |
22 |
0 |
|
Seed sequence |
NAACCRCAAN |
|
6 |
2991 |
76 |
4645 |
41 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
30 |
7636 |
96 |
52 |
|
SELEX cycle |
4 |
|
8 |
7636 |
368 |
202 |
184 |
|
Number of repeats |
monomeric |
|
9 |
7636 |
1015 |
1772 |
964 |
|
Comment |
|
|
10 |
4131 |
1198 |
861 |
1445 |
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|