|
RUNX2_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RUNX2 |
1 |
603 |
281 |
184 |
774 |
|
TF group |
RUNX |
2 |
1170 |
180 |
625 |
262 |
|
Polypeptide used |
DBD |
3 |
1386 |
113 |
235 |
52 |
|
Ligand sequence |
TACCTA40NTCC |
4 |
20 |
1538 |
64 |
28 |
|
Batch of SELEX experiment |
AI |
5 |
17 |
1537 |
51 |
26 |
|
Seed sequence |
NAACCGCAAACCRCAN |
6 |
459 |
41 |
2242 |
55 |
|
Hamming distance of sequences to seed |
2 |
7 |
20 |
1546 |
16 |
39 |
|
SELEX cycle |
4 |
8 |
1396 |
11 |
57 |
179 |
|
Number of repeats |
dimeric |
9 |
1344 |
72 |
365 |
44 |
|
Comment |
|
10 |
1384 |
90 |
166 |
64 |
|
Representative matrix |
yes |
11 |
103 |
1565 |
122 |
33 |
|
|
|
12 |
77 |
1550 |
73 |
92 |
|
|
|
13 |
488 |
114 |
1592 |
75 |
|
|
|
14 |
105 |
1518 |
118 |
156 |
|
Source: |
|
15 |
1297 |
168 |
374 |
173 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
726 |
212 |
586 |
295 |
|
|
|
|
|
|
|
|
|
|
|
|
RUNX2_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RUNX2 |
1 |
509 |
231 |
159 |
743 |
|
TF group |
RUNX |
2 |
860 |
197 |
609 |
190 |
|
Polypeptide used |
DBD |
3 |
984 |
60 |
120 |
15 |
|
Ligand sequence |
TACCTA40NTCC |
4 |
3 |
1085 |
10 |
3 |
|
Batch of SELEX experiment |
AI |
5 |
0 |
1085 |
9 |
2 |
|
Seed sequence |
WAACCRCAAWAACCRCAN |
6 |
358 |
5 |
1094 |
46 |
|
Hamming distance of sequences to seed |
2 |
7 |
0 |
1100 |
10 |
12 |
|
SELEX cycle |
4 |
8 |
960 |
67 |
203 |
107 |
|
Number of repeats |
dimeric |
9 |
811 |
165 |
457 |
487 |
|
Comment |
|
10 |
734 |
84 |
150 |
420 |
|
Representative matrix |
yes |
11 |
931 |
93 |
207 |
241 |
|
|
|
12 |
977 |
84 |
140 |
15 |
|
|
|
13 |
12 |
1100 |
15 |
24 |
|
|
|
14 |
28 |
1105 |
36 |
11 |
|
|
|
15 |
449 |
31 |
946 |
66 |
|
|
|
16 |
38 |
1098 |
25 |
73 |
|
Source: |
|
17 |
991 |
95 |
202 |
114 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
18 |
519 |
107 |
395 |
271 |
|
|
|
|
|
|
|
|
|
|
|
|
RUNX2_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
RUNX2 |
1 |
3872 |
1092 |
326 |
2748 |
|
TF group |
RUNX |
2 |
6621 |
556 |
1215 |
582 |
|
Polypeptide used |
DBD |
3 |
6621 |
325 |
0 |
0 |
|
Ligand sequence |
TACCTA40NTCC |
4 |
0 |
6621 |
0 |
0 |
|
Batch of SELEX experiment |
AI |
5 |
0 |
6621 |
0 |
0 |
|
Seed sequence |
WAACCRCAN |
6 |
1914 |
36 |
4707 |
120 |
|
Hamming distance of sequences to seed |
1 |
7 |
0 |
6621 |
0 |
0 |
|
SELEX cycle |
4 |
8 |
6621 |
476 |
458 |
191 |
|
Number of repeats |
monomeric |
9 |
4202 |
677 |
1134 |
607 |
|
Comment |
|
|
|
|
|
|
|
Representative
matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |