RUNX2_d1

 

 

 

 

A

C

G

T

 

Name

RUNX2

1

603

281

184

774

 

TF group

RUNX

2

1170

180

625

262

 

Polypeptide used

DBD

3

1386

113

235

52

 

Ligand sequence

TACCTA40NTCC

4

20

1538

64

28

 

Batch of SELEX experiment

AI

5

17

1537

51

26

 

Seed sequence

NAACCGCAAACCRCAN

6

459

41

2242

55

 

Hamming distance of sequences to seed

2

7

20

1546

16

39

 

SELEX cycle

4

8

1396

11

57

179

 

Number of repeats

dimeric

9

1344

72

365

44

 

Comment

 

10

1384

90

166

64

 

Representative matrix

yes

11

103

1565

122

33

 

 

 

12

77

1550

73

92

 

 

 

13

488

114

1592

75

 

 

 

14

105

1518

118

156

 

Source:

 

15

1297

168

374

173

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

726

212

586

295

 

 

 

 

 

 

 

 

 

 

 

 

RUNX2_d2

 

 

 

 

A

C

G

T

 

Name

RUNX2

1

509

231

159

743

 

TF group

RUNX

2

860

197

609

190

 

Polypeptide used

DBD

3

984

60

120

15

 

Ligand sequence

TACCTA40NTCC

4

3

1085

10

3

 

Batch of SELEX experiment

AI

5

0

1085

9

2

 

Seed sequence

WAACCRCAAWAACCRCAN

6

358

5

1094

46

 

Hamming distance of sequences to seed

2

7

0

1100

10

12

 

SELEX cycle

4

8

960

67

203

107

 

Number of repeats

dimeric

9

811

165

457

487

 

Comment

 

10

734

84

150

420

 

Representative matrix

yes

11

931

93

207

241

 

 

 

12

977

84

140

15

 

 

 

13

12

1100

15

24

 

 

 

14

28

1105

36

11

 

 

 

15

449

31

946

66

 

 

 

16

38

1098

25

73

 

Source:

 

17

991

95

202

114

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

519

107

395

271

 

 

 

 

 

 

 

 

 

 

 

 

RUNX2_m1

 

 

 

 

A

C

G

T

 

Name

RUNX2

1

3872

1092

326

2748

 

TF group

RUNX

2

6621

556

1215

582

 

Polypeptide used

DBD

3

6621

325

0

0

 

Ligand sequence

TACCTA40NTCC

4

0

6621

0

0

 

Batch of SELEX experiment

AI

5

0

6621

0

0

 

Seed sequence

WAACCRCAN

6

1914

36

4707

120

 

Hamming distance of sequences to seed

1

7

0

6621

0

0

 

SELEX cycle

4

8

6621

476

458

191

 

Number of repeats

monomeric

9

4202

677

1134

607

 

Comment

 

 

 

 

 

 

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764