RFX5_1

 

 

 

 

A

C

G

T

 

Name

RFX5

1

277

1075

790

490

 

TF group

RFX

2

90

0

2819

9

 

Polypeptide used

DBD

3

4

33

15

2902

 

Ligand sequence

TGGAGC30NGAT

4

47

98

10

2842

 

Batch of SELEX experiment

AI

5

821

81

1675

142

 

Seed sequence

NGTTRCCATGGYAACN

6

3

2378

38

69

 

Hamming distance of sequences to seed

2

7

1

2118

7

725

 

SELEX cycle

2

8

2146

42

47

188

 

Number of repeats

dimeric

9

144

56

22

2872

 

Comment

 

10

760

11

2266

8

 

Representative matrix

no

11

143

48

2664

0

 

 

 

12

139

1613

61

882

 

 

 

13

2166

10

99

46

 

 

 

14

2206

21

16

9

 

Source:

 

15

26

2379

12

67

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

462

890

905

286

 

 

 

 

 

 

 

 

 

 

 

 

RFX5_2

 

 

 

 

A

C

G

T

 

Name

RFX5

1

273

1034

814

471

 

TF group

RFX

2

83

2

2193

21

 

Polypeptide used

DBD

3

19

23

22

2199

 

Ligand sequence

TGGAGC30NGAT

4

67

88

17

2142

 

Batch of SELEX experiment

AI

5

1022

81

1018

119

 

Seed sequence

SGTTRCCATRGCAACS

6

7

2022

40

65

 

Hamming distance of sequences to seed

2

7

2

1987

11

220

 

SELEX cycle

2

8

1901

33

54

109

 

Number of repeats

dimeric

9

89

36

18

2167

 

Comment

 

10

876

3

1246

0

 

Representative matrix

no

11

121

40

2095

0

 

 

 

12

117

1880

57

353

 

 

 

13

1947

2

62

20

 

 

 

14

1964

24

10

4

 

Source:

 

15

15

2049

9

38

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

454

861

913

279