RFX4_1

 

 

 

 

A

C

G

T

 

Name

RFX4

1

2196

4157

2887

2408

 

TF group

RFX

2

2259

17

15889

246

 

Polypeptide used

DBD

3

417

380

203

13637

 

Ligand sequence

TGACAG20NGA

4

6538

2705

121

10463

 

Batch of SELEX experiment

O

5

4222

464

6675

2315

 

Seed sequence

NGTTNCCATGGNAACN

6

3

9323

18

1626

 

Hamming distance of sequences to seed

2

7

1

8836

45

3472

 

SELEX cycle

3

8

10325

856

936

967

 

Number of repeats

dimeric

9

965

664

523

15458

 

Comment

 

10

2944

68

14990

1

 

Representative matrix

no

11

4464

559

13778

107

 

 

 

12

1340

5757

98

3910

 

 

 

13

8911

127

1785

4986

 

 

 

14

9968

145

189

25

 

Source:

 

15

33

8784

11

304

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

2000

3460

5109

1853

 

 

 

 

 

 

 

 

 

 

 

 

RFX4_2

 

 

 

 

A

C

G

T

 

Name

RFX4

1

811

2231

1303

779

 

TF group

RFX

2

61

0

5474

89

 

Polypeptide used

DBD

3

2

35

4

4893

 

Ligand sequence

TGACAG20NGA

4

168

344

9

4804

 

Batch of SELEX experiment

O

5

294

67

5375

77

 

Seed sequence

SGTTGCYARGCAACS

6

1

4324

0

3

 

Hamming distance of sequences to seed

2

7

7

1339

22

3205

 

SELEX cycle

3

8

3499

724

1212

0

 

Number of repeats

dimeric

9

1601

111

3171

55

 

Comment

 

10

4

3

5409

2

 

Representative matrix

no

11

831

3978

6

594

 

 

 

12

4172

7

176

1167

 

 

 

13

4295

19

24

2

 

Source:

 

14

10

4263

0

8

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

741

1332

2711

181