RFX3_1

 

 

 

 

A

C

G

T

 

Name

RFX3

1

2881

7618

6511

4635

 

TF group

RFX

2

3237

47

33147

184

 

Polypeptide used

DBD

3

368

699

338

25178

 

Ligand sequence

TGGCTT20NGA

4

5844

3781

129

21627

 

Batch of SELEX experiment

AC

5

7660

1093

13832

3320

 

Seed sequence

NGTTNCCATGGNAACN

6

46

15003

484

1462

 

Hamming distance of sequences to seed

2

7

1

14712

47

4144

 

SELEX cycle

3

8

18969

393

569

1490

 

Number of repeats

dimeric

9

1771

376

326

24231

 

Comment

 

10

8516

81

27877

2

 

Representative matrix

no

11

6275

766

29307

34

 

 

 

12

2934

9365

969

5558

 

 

 

13

17869

110

3429

3611

 

 

 

14

19507

171

522

98

 

Source:

 

15

95

15778

26

842

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

4359

7051

9040

1611

 

 

 

 

 

 

 

 

 

 

 

 

RFX3_2

 

 

 

 

A

C

G

T

 

Name

RFX3

1

129

1245

510

443

 

TF group

RFX

2

7

0

2230

94

 

Polypeptide used

DBD

3

2

6

3

2102

 

Ligand sequence

TGGCTT20NGA

4

35

81

5

2051

 

Batch of SELEX experiment

AC

5

137

66

2113

20

 

Seed sequence

SGTTGCYARGCAACS

6

1

2463

4

0

 

Hamming distance of sequences to seed

2

7

1

164

1

1943

 

SELEX cycle

3

8

2143

5

8

0

 

Number of repeats

dimeric

9

832

90

1107

92

 

Comment

 

10

0

0

2201

1

 

Representative matrix

no

11

99

2205

126

261

 

 

 

12

2124

12

104

106

 

 

 

13

2169

6

23

2

 

Source:

 

14

85

2475

0

39

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

236

844

824

201

 

 

 

 

 

 

 

 

 

 

 

 

Rfx3_3

 

 

 

 

A

C

G

T

 

Name

Rfx3

1

121

526

558

146

 

TF group

RFX

2

4

3

2106

0

 

Polypeptide used

DBD

3

1

3

2

1682

 

Ligand sequence

TGGGTA20NCG

4

149

33

2

1483

 

Batch of SELEX experiment

P

5

460

11

1122

80

 

Seed sequence

NGTTNCCATGGNAACN

6

0

917

5

113

 

Hamming distance of sequences to seed

2

7

1

892

0

162

 

SELEX cycle

3

8

1111

0

7

13

 

Number of repeats

dimeric

9

10

5

3

1725

 

Comment

 

10

300

0

1680

0

 

Representative matrix

no

11

173

0

1854

2

 

 

 

12

54

692

12

392

 

 

 

13

1116

1

54

44

 

 

 

14

1135

1

0

3

 

Source:

 

15

0

988

2

20

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

201

350

912

94