|
|
RFX2_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
RFX2 |
|
1 |
1381 |
5653 |
4042 |
2336 |
|
TF group |
RFX |
|
2 |
270 |
12 |
13942 |
8 |
|
Polypeptide used |
DBD |
|
3 |
28 |
38 |
14 |
13836 |
|
Ligand sequence |
TAACCC20NCCA |
|
4 |
1990 |
888 |
14 |
12503 |
|
Batch of SELEX experiment |
Y |
|
5 |
3948 |
237 |
8026 |
1175 |
|
Seed sequence |
NGTTRCCATGGYAACN |
|
6 |
12 |
13197 |
93 |
1459 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
2 |
12326 |
5 |
3386 |
|
SELEX cycle |
3 |
|
8 |
9773 |
38 |
65 |
184 |
|
Number of repeats |
dimeric |
|
9 |
215 |
88 |
29 |
13479 |
|
Comment |
|
|
10 |
3132 |
7 |
12113 |
2 |
|
Representative matrix |
yes |
|
11 |
2007 |
128 |
13075 |
3 |
|
|
|
|
12 |
1359 |
8298 |
354 |
4297 |
|
|
|
|
13 |
9266 |
26 |
958 |
1194 |
|
|
|
|
14 |
9876 |
14 |
25 |
16 |
|
Source: |
|
|
15 |
7 |
14067 |
1 |
309 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
16 |
2415 |
3654 |
5451 |
1441 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
RFX2_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
RFX2 |
|
1 |
7 |
146 |
70 |
19 |
|
TF group |
RFX |
|
2 |
1 |
0 |
242 |
7 |
|
Polypeptide used |
DBD |
|
3 |
0 |
0 |
0 |
203 |
|
Ligand sequence |
TAACCC20NCCA |
|
4 |
0 |
0 |
0 |
202 |
|
Batch of SELEX experiment |
Y |
|
5 |
1 |
9 |
241 |
0 |
|
Seed sequence |
SGTTGCYARGCAACS |
|
6 |
0 |
244 |
0 |
0 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
1 |
7 |
0 |
195 |
|
SELEX cycle |
3 |
|
8 |
204 |
0 |
0 |
0 |
|
Number of repeats |
dimeric |
|
9 |
86 |
3 |
137 |
5 |
|
Comment |
|
|
10 |
0 |
0 |
243 |
0 |
|
Representative
matrix |
no |
|
11 |
0 |
240 |
16 |
1 |
|
|
|
|
12 |
204 |
0 |
5 |
0 |
|
|
|
|
13 |
205 |
0 |
4 |
0 |
|
Source: |
|
|
14 |
10 |
245 |
3 |
0 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
24 |
89 |
126 |
5 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Rfx2_3 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Rfx2 |
|
1 |
1103 |
4786 |
2882 |
2104 |
|
TF group |
RFX |
|
2 |
604 |
6 |
11673 |
24 |
|
Polypeptide used |
DBD |
|
3 |
70 |
182 |
51 |
10915 |
|
Ligand sequence |
TGGTAG20NATT |
|
4 |
2367 |
1237 |
69 |
9651 |
|
Batch of SELEX experiment |
AC |
|
5 |
3388 |
289 |
5670 |
1248 |
|
Seed sequence |
NGTTRCCATGGYAACN |
|
6 |
11 |
10917 |
107 |
1337 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
6 |
10427 |
23 |
2876 |
|
SELEX cycle |
3 |
|
8 |
7001 |
80 |
118 |
249 |
|
Number of repeats |
dimeric |
|
9 |
281 |
145 |
81 |
10544 |
|
Comment |
|
|
10 |
3125 |
19 |
10184 |
8 |
|
Representative matrix |
no |
|
11 |
1944 |
211 |
10771 |
24 |
|
|
|
|
12 |
1337 |
6433 |
341 |
3745 |
|
|
|
|
13 |
6681 |
82 |
1033 |
1702 |
|
|
|
|
14 |
7247 |
55 |
88 |
50 |
|
Source: |
|
|
15 |
25 |
10781 |
6 |
404 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
16 |
1609 |
3873 |
3768 |
1188 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Rfx2_4 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Rfx2 |
|
1 |
174 |
1347 |
1008 |
424 |
|
TF group |
RFX |
|
2 |
14 |
5 |
2717 |
14 |
|
Polypeptide used |
DBD |
|
3 |
7 |
9 |
0 |
2205 |
|
Ligand sequence |
TGGTAG20NATT |
|
4 |
61 |
80 |
3 |
2161 |
|
Batch of SELEX experiment |
AC |
|
5 |
188 |
35 |
2649 |
24 |
|
Seed sequence |
SGTTGCYARGCAACS |
|
6 |
1 |
2776 |
0 |
16 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
2 |
255 |
8 |
1965 |
|
SELEX cycle |
3 |
|
8 |
2049 |
17 |
21 |
0 |
|
Number of repeats |
dimeric |
|
9 |
848 |
138 |
1508 |
141 |
|
Comment |
|
|
10 |
13 |
14 |
2797 |
8 |
|
Representative matrix |
yes |
|
11 |
109 |
2525 |
172 |
317 |
|
|
|
|
12 |
1995 |
39 |
239 |
159 |
|
|
|
|
13 |
2060 |
94 |
122 |
28 |
|
Source: |
|
|
14 |
90 |
2623 |
74 |
101 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
517 |
930 |
1337 |
218 |
|
|
|