|
|
PRRX2_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
PRRX2 |
|
1 |
644 |
1522 |
715 |
969 |
|
TF group |
homeodomain |
|
2 |
407 |
2052 |
250 |
1797 |
|
Polypeptide used |
full |
|
3 |
3849 |
361 |
412 |
298 |
|
Ligand sequence |
TGGGGT20NGA |
|
4 |
3849 |
232 |
124 |
70 |
|
Batch of SELEX experiment |
AE |
|
5 |
13 |
22 |
11 |
3849 |
|
Seed sequence |
NYAATTAN |
|
6 |
466 |
504 |
239 |
3849 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
3849 |
198 |
39 |
400 |
|
SELEX cycle |
2 |
|
8 |
1234 |
878 |
1035 |
702 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
Prrx2_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Prrx2 |
|
1 |
845 |
1893 |
820 |
1416 |
|
TF group |
homeodomain |
|
2 |
393 |
1857 |
186 |
3118 |
|
Polypeptide used |
DBD |
|
3 |
4975 |
175 |
272 |
183 |
|
Ligand sequence |
TATGAA20NAGG |
|
4 |
4975 |
12 |
0 |
77 |
|
Batch of SELEX experiment |
Z |
|
5 |
0 |
0 |
0 |
4975 |
|
Seed sequence |
NYAATTAN |
|
6 |
0 |
304 |
28 |
4975 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
4975 |
267 |
93 |
279 |
|
SELEX cycle |
3 |
|
8 |
1810 |
705 |
1658 |
802 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|