PRRX1_m1

 

 

 

 

A

C

G

T

 

Name

PRRX1

1

4132

9063

4339

6364

 

TF group

homeodomain

2

2373

11122

1121

12775

 

Polypeptide used

DBD

3

23897

1088

1776

810

 

Ligand sequence

TAACGG20NGCA

4

23897

503

202

209

 

Batch of SELEX experiment

AC

5

0

3

0

23897

 

Seed sequence

NYAATTAN

6

1264

2302

1004

23897

 

Hamming distance of sequences to seed

1

7

23897

644

136

1229

 

SELEX cycle

2

8

9498

4269

6366

3765

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

PRRX1_m2

 

 

 

 

A

C

G

T

 

Name

PRRX1

1

1414

4493

1746

2523

 

TF group

homeodomain

2

684

5111

326

5066

 

Polypeptide used

full

3

10177

764

640

532

 

Ligand sequence

TTCCCC20NTA

4

10177

358

117

307

 

Batch of SELEX experiment

AD

5

57

28

0

10177

 

Seed sequence

NYAATTAN

6

547

1210

438

10177

 

Hamming distance of sequences to seed

1

7

10177

709

57

979

 

SELEX cycle

2

8

3287

2230

2968

1693

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

PRRX1_d1

 

 

 

 

A

C

G

T

 

Name

PRRX1

1

90

53

22

617

 

TF group

homeodomain

2

617

29

100

77

 

Polypeptide used

full

3

617

21

27

17

 

Ligand sequence

TTCCCC20NTA

4

50

211

78

617

 

Batch of SELEX experiment

AD

5

36

354

85

263

 

Seed sequence

TAATYTAATTA

6

60

285

219

617

 

Hamming distance of sequences to seed

1

7

617

31

83

16

 

SELEX cycle

2

8

617

9

19

8

 

Number of repeats

dimeric

9

0

2

4

617

 

Comment

 

10

75

63

6

617

 

Representative matrix

no

11

617

13

70

84

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764