PROP1_1

 

 

 

 

A

C

G

T

 

Name

PROP1

1

63

12

10

575

 

TF group

homeodomain

2

575

0

0

11

 

Polypeptide used

DBD

3

575

0

2

0

 

Ligand sequence

TCCCGA30NGCC

4

41

39

18

575

 

Batch of SELEX experiment

AI

5

28

209

20

367

 

Seed sequence

TAATYNAATTA

6

183

57

78

258

 

Hamming distance of sequences to seed

1

7

575

38

0

33

 

SELEX cycle

4

8

575

3

46

6

 

Number of repeats

dimeric

9

2

0

0

575

 

Comment

 

10

13

18

6

575

 

Representative matrix

no

11

575

0

15

47

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

PROP1_2

 

 

 

 

A

C

G

T

 

Name

PROP1

1

1239

785

264

4996

 

TF group

homeodomain

2

4996

77

310

411

 

Polypeptide used

full

3

4996

73

32

15

 

Ligand sequence

TGTATT20NGA

4

659

1426

202

3570

 

Batch of SELEX experiment

AE

5

572

2901

839

2095

 

Seed sequence

TAAYYNAATTA

6

982

1354

855

1804

 

Hamming distance of sequences to seed

1

7

4996

1491

531

661

 

SELEX cycle

3

8

4996

359

141

279

 

Number of repeats

dimeric

9

11

47

18

4996

 

Comment

 

10

555

420

81

4996

 

Representative matrix

no

11

4996

199

410

594

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764