|
|
PRDM1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
PRDM1 |
|
1 |
807 |
394 |
407 |
693 |
|
TF group |
C2H2 |
|
2 |
879 |
50 |
1552 |
54 |
|
Polypeptide used |
full |
|
3 |
2061 |
133 |
75 |
143 |
|
Ligand sequence |
TTGAGG20NGAT |
|
4 |
2120 |
32 |
111 |
66 |
|
Batch of SELEX experiment |
AE |
|
5 |
2148 |
18 |
29 |
6 |
|
Seed sequence |
NRAAAGTGAAAGTGN |
|
6 |
45 |
32 |
2890 |
56 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
43 |
324 |
365 |
1789 |
|
SELEX cycle |
2 |
|
8 |
61 |
1 |
2912 |
1 |
|
Number of repeats |
monomeric or dimeric |
|
9 |
2161 |
15 |
9 |
4 |
|
Comment |
|
|
10 |
2094 |
9 |
187 |
2 |
|
Representative matrix |
yes |
|
11 |
2202 |
13 |
18 |
8 |
|
|
|
|
12 |
15 |
10 |
2953 |
11 |
|
|
|
|
13 |
9 |
108 |
99 |
1937 |
|
Source: |
|
|
14 |
560 |
268 |
1481 |
759 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
740 |
540 |
648 |
451 |
|
|
|