|
|
PKNOX2_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
PKNOX2 |
|
1 |
37 |
0 |
9 |
1192 |
|
TF group |
MEIS |
|
2 |
1 |
6 |
1389 |
0 |
|
Polypeptide used |
DBD |
|
3 |
1124 |
3 |
13 |
6 |
|
Ligand sequence |
TGTATT20NGA |
|
4 |
0 |
1250 |
0 |
9 |
|
Batch of SELEX experiment |
Y |
|
5 |
1169 |
0 |
1 |
4 |
|
Seed sequence |
TGACAGSTGTCA |
|
6 |
7 |
0 |
1298 |
118 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
39 |
304 |
702 |
0 |
|
SELEX cycle |
3 |
|
8 |
0 |
4 |
0 |
1204 |
|
Number of repeats |
dimeric |
|
9 |
3 |
1 |
1370 |
0 |
|
Comment |
|
|
10 |
10 |
29 |
5 |
1167 |
|
Representative matrix |
no |
|
11 |
11 |
1265 |
6 |
3 |
|
Source: |
|
|
12 |
1190 |
1 |
21 |
9 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
Pknox2_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Pknox2 |
|
1 |
195 |
269 |
34 |
71306 |
|
TF group |
MEIS |
|
2 |
30 |
6 |
80787 |
8 |
|
Polypeptide used |
DBD |
|
3 |
69258 |
23 |
137 |
87 |
|
Ligand sequence |
TGCTCG20NCG |
|
4 |
26 |
68373 |
19 |
60 |
|
Batch of SELEX experiment |
Q |
|
5 |
70040 |
18 |
85 |
27 |
|
Seed sequence |
TGACAGSTGTCA |
|
6 |
59 |
25 |
77412 |
2985 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
841 |
17596 |
29853 |
15 |
|
SELEX cycle |
4 |
|
8 |
22 |
64 |
34 |
73631 |
|
Number of repeats |
dimeric |
|
9 |
38 |
9 |
78359 |
18 |
|
Comment |
|
|
10 |
1291 |
158 |
29 |
71647 |
|
Representative
matrix |
no |
|
11 |
36 |
70640 |
50 |
64 |
|
Source: |
|
|
12 |
67902 |
77 |
254 |
243 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|