PITX1_1

 

 

 

 

A

C

G

T

 

Name

PITX1

1

801

900

727

561

 

TF group

homeodomain

2

727

1455

337

1533

 

Polypeptide used

DBD

3

220

0

6

2989

 

Ligand sequence

TCATGC20NCG

4

2989

16

82

82

 

Batch of SELEX experiment

Y

5

2989

0

2

0

 

Seed sequence

NYTAATCCN

6

131

56

445

2989

 

Hamming distance of sequences to seed

1

7

130

2989

89

116

 

SELEX cycle

3

8

100

2989

71

457

 

Number of repeats

monomeric

9

536

1510

380

562

 

Comment

 

 

 

 

 

 

 

Representative matrix

yes

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

PITX1_2

 

 

 

 

A

C

G

T

 

Name

PITX1

1

1356

2315

2275

2155

 

TF group

homeodomain

2

2863

3459

1373

8101

 

Polypeptide used

full

3

465

3

3

8101

 

Ligand sequence

TGAGCA20NCGA

4

8101

12

289

64

 

Batch of SELEX experiment

AF

5

8101

0

22

0

 

Seed sequence

NTTAATCCN

6

143

37

903

8101

 

Hamming distance of sequences to seed

1

7

408

8101

284

553

 

SELEX cycle

3

8

291

8101

263

1967

 

Number of repeats

monomeric

9

1869

2782

1161

2289

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

 

 

 

 

 

 

 

 

 

PITX1_3

 

 

 

 

A

C

G

T

 

Name

PITX1

1

600

842

338

1335

 

TF group

homeodomain

2

162

23

0

3116

 

Polypeptide used

full

3

3116

155

210

49

 

Ligand sequence

TCTCTT20NTCG

4

3116

0

0

17

 

Batch of SELEX experiment

W

5

70

59

467

3116

 

Seed sequence

NTAATCCN

6

222

3116

42

235

 

Hamming distance of sequences to seed

1

7

164

3116

138

612

 

SELEX cycle

2

8

711

1275

430

700

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

replicate experiment

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764