|
|
PHOX2B_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
PHOX2B |
|
1 |
1997 |
1056 |
461 |
9441 |
|
TF group |
homeodomain |
|
2 |
9441 |
200 |
1390 |
737 |
|
Polypeptide used |
DBD |
|
3 |
9441 |
8 |
53 |
7 |
|
Ligand sequence |
TGGTCT20NGA |
|
4 |
1339 |
4095 |
643 |
9441 |
|
Batch of SELEX experiment |
Y |
|
5 |
549 |
4575 |
2272 |
4866 |
|
Seed sequence |
TAATYYAATTA |
|
6 |
1153 |
4112 |
762 |
5329 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
9441 |
698 |
1794 |
371 |
|
SELEX cycle |
3 |
|
8 |
9441 |
128 |
293 |
144 |
|
Number of repeats |
dimeric |
|
9 |
0 |
0 |
0 |
9441 |
|
Comment |
|
|
10 |
886 |
799 |
41 |
9441 |
|
Representative matrix |
no |
|
11 |
9441 |
216 |
777 |
1434 |
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
PHOX2B_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
PHOX2B |
|
1 |
3604 |
1710 |
611 |
23359 |
|
TF group |
homeodomain |
|
2 |
23359 |
270 |
2656 |
1151 |
|
Polypeptide used |
full |
|
3 |
23359 |
25 |
63 |
4 |
|
Ligand sequence |
TGCTGT20NGA |
|
4 |
1784 |
9263 |
905 |
23359 |
|
Batch of SELEX experiment |
AE |
|
5 |
955 |
10961 |
5380 |
12398 |
|
Seed sequence |
TAATYYAATTA |
|
6 |
3134 |
10392 |
2149 |
12967 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
23359 |
1110 |
4248 |
604 |
|
SELEX cycle |
3 |
|
8 |
23359 |
214 |
394 |
102 |
|
Number of repeats |
dimeric |
|
9 |
0 |
9 |
0 |
23359 |
|
Comment |
|
|
10 |
1514 |
1130 |
50 |
23359 |
|
Representative
matrix |
no |
|
11 |
23359 |
202 |
1102 |
2912 |
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|