PDX1_d1

 

 

 

 

A

C

G

T

 

Name

PDX1

1

279

447

581

285

 

TF group

homeodomain

2

80

578

25

1015

 

Polypeptide used

DBD

3

1592

412

174

103

 

Ligand sequence

TGGAAT30NAAT

4

1592

50

24

42

 

Batch of SELEX experiment

AI

5

17

25

16

1592

 

Seed sequence

NYAATTARNNNYAATTAN

6

45

55

160

1592

 

Hamming distance of sequences to seed

1

7

1592

23

138

141

 

SELEX cycle

3

8

887

218

706

154

 

Number of repeats

dimeric

9

248

524

458

363

 

Comment

 

10

491

260

583

258

 

Representative matrix

no

11

287

420

567

318

 

 

 

12

71

511

35

1081

 

 

 

13

1592

427

134

102

 

 

 

14

1592

49

37

42

 

 

 

15

30

23

20

1592

 

 

 

16

89

100

176

1592

 

Source:

 

17

1592

25

135

89

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

18

571

302

493

227

 

 

 

 

 

 

 

 

 

 

 

 

PDX1_m1

 

 

 

 

A

C

G

T

 

Name

PDX1

1

1483

2206

2441

999

 

TF group

homeodomain

2

292

2469

0

4661

 

Polypeptide used

DBD

3

4839

2291

185

78

 

Ligand sequence

TGGAAT30NAAT

4

7130

45

0

0

 

Batch of SELEX experiment

AI

5

0

0

0

7130

 

Seed sequence

NYMATTAN

6

0

0

0

7130

 

Hamming distance of sequences to seed

1

7

7130

0

0

0

 

SELEX cycle

3

8

2181

1216

2881

852

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764