OTX2_d1

 

 

 

 

A

C

G

T

 

Name

OTX2

1

779

624

1325

1229

 

TF group

homeodomain

2

1059

866

540

1493

 

Polypeptide used

DBD

3

111

26

19

3957

 

Ligand sequence

TATGGG20NGGG

4

3957

13

67

70

 

Batch of SELEX experiment

AC

5

3957

0

10

0

 

Seed sequence

NNTAATCCGMTTANN

6

70

21

374

3957

 

Hamming distance of sequences to seed

1

7

36

3957

223

22

 

SELEX cycle

4

8

118

3957

84

114

 

Number of repeats

dimeric

9

80

182

3957

1060

 

Comment

 

10

2856

1101

123

148

 

Representative matrix

no

11

38

67

34

3957

 

 

 

12

185

58

38

3957

 

 

 

13

3957

62

124

432

 

Source:

 

14

1362

440

809

1347

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

15

995

1013

974

975

 

 

 

 

 

 

 

 

 

 

 

 

OTX2_m1

 

 

 

 

A

C

G

T

 

Name

OTX2

1

6051

6846

2453

12678

 

TF group

homeodomain

2

971

136

0

28028

 

Polypeptide used

DBD

3

28028

43

360

1328

 

Ligand sequence

TATGGG20NGGG

4

28028

0

0

0

 

Batch of SELEX experiment

AC

5

370

62

2361

28028

 

Seed sequence

NTAATCCN

6

1062

28028

699

1228

 

Hamming distance of sequences to seed

1

7

1094

28028

1630

8343

 

SELEX cycle

4

8

2573

7601

8260

9594

 

Number of repeats

monomeric

 

 

 

 

 

 

Comment

 

 

 

 

 

 

 

Representative matrix

no

 

 

 

 

 

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764