|
|
OTX1_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
OTX1 |
|
1 |
245 |
418 |
517 |
343 |
|
TF group |
homeodomain |
|
2 |
418 |
366 |
268 |
471 |
|
Polypeptide used |
DBD |
|
3 |
68 |
58 |
8 |
1522 |
|
Ligand sequence |
TGATAA20NGA |
|
4 |
1522 |
7 |
34 |
26 |
|
Batch of SELEX experiment |
Y |
|
5 |
1522 |
1 |
4 |
0 |
|
Seed sequence |
NNTAATCCGATTANN |
|
6 |
64 |
43 |
347 |
1522 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
28 |
1522 |
112 |
0 |
|
SELEX cycle |
3 |
|
8 |
30 |
1522 |
0 |
33 |
|
Number of repeats |
dimeric |
|
9 |
7 |
12 |
1522 |
237 |
|
Comment |
|
|
10 |
1522 |
731 |
42 |
61 |
|
Representative matrix |
no |
|
11 |
6 |
22 |
2 |
1522 |
|
|
|
|
12 |
87 |
71 |
8 |
1522 |
|
|
|
|
13 |
1522 |
23 |
60 |
130 |
|
Source: |
|
|
14 |
534 |
327 |
257 |
404 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
396 |
523 |
322 |
280 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
OTX1_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
OTX1 |
|
1 |
5118 |
6501 |
3186 |
8636 |
|
TF group |
homeodomain |
|
2 |
745 |
90 |
0 |
23441 |
|
Polypeptide used |
DBD |
|
3 |
23441 |
0 |
254 |
544 |
|
Ligand sequence |
TGATAA20NGA |
|
4 |
23441 |
0 |
0 |
0 |
|
Batch of SELEX experiment |
Y |
|
5 |
243 |
0 |
3160 |
23441 |
|
Seed sequence |
NTAATCCN |
|
6 |
647 |
23441 |
659 |
378 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
789 |
23441 |
8662 |
3363 |
|
SELEX cycle |
3 |
|
8 |
1873 |
6182 |
10599 |
4787 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
|
Representative
matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
Otx1_d2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Otx1 |
|
1 |
123 |
129 |
168 |
160 |
|
TF group |
homeodomain |
|
2 |
153 |
142 |
77 |
208 |
|
Polypeptide used |
DBD |
|
3 |
40 |
16 |
0 |
580 |
|
Ligand sequence |
TCTTAG20NATG |
|
4 |
580 |
0 |
20 |
17 |
|
Batch of SELEX experiment |
AC |
|
5 |
580 |
0 |
1 |
0 |
|
Seed sequence |
NNTAATCCGATTANN |
|
6 |
10 |
5 |
117 |
580 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
6 |
580 |
50 |
0 |
|
SELEX cycle |
3 |
|
8 |
20 |
580 |
0 |
14 |
|
Number of repeats |
dimeric |
|
9 |
4 |
11 |
580 |
69 |
|
Comment |
|
|
10 |
580 |
195 |
12 |
34 |
|
Representative matrix |
yes |
|
11 |
6 |
6 |
1 |
580 |
|
|
|
|
12 |
30 |
8 |
0 |
580 |
|
|
|
|
13 |
580 |
7 |
21 |
51 |
|
Source: |
|
|
14 |
194 |
90 |
149 |
147 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
142 |
192 |
137 |
109 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Otx1_m2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Otx1 |
|
1 |
1260 |
1057 |
584 |
1626 |
|
TF group |
homeodomain |
|
2 |
213 |
201 |
0 |
4527 |
|
Polypeptide used |
DBD |
|
3 |
4527 |
259 |
344 |
195 |
|
Ligand sequence |
TCTTAG20NATG |
|
4 |
4527 |
5 |
35 |
0 |
|
Batch of SELEX experiment |
AC |
|
5 |
0 |
154 |
595 |
4527 |
|
Seed sequence |
NTAATCCN |
|
6 |
292 |
4527 |
212 |
121 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
158 |
4527 |
493 |
1193 |
|
SELEX cycle |
3 |
|
8 |
614 |
1015 |
1604 |
1294 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|