|
|
ONECUT1_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ONECUT1 |
|
1 |
3403 |
1375 |
1936 |
1194 |
|
TF group |
CUT |
|
2 |
4130 |
713 |
1874 |
1191 |
|
Polypeptide used |
DBD |
|
3 |
7908 |
824 |
1288 |
1872 |
|
Ligand sequence |
TAGCTC20NTCT |
|
4 |
7908 |
468 |
275 |
2265 |
|
Batch of SELEX experiment |
Y |
|
5 |
7908 |
24 |
392 |
27 |
|
Seed sequence |
NNAAAATCRATAWN |
|
6 |
7908 |
10 |
24 |
15 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
12 |
10 |
7 |
7908 |
|
SELEX cycle |
3 |
|
8 |
18 |
7908 |
9 |
3 |
|
Number of repeats |
monomeric |
|
9 |
3718 |
13 |
4190 |
2 |
|
Comment |
|
|
10 |
7908 |
7 |
2 |
26 |
|
Representative matrix |
yes |
|
11 |
7 |
4 |
0 |
7908 |
|
|
|
|
12 |
7908 |
187 |
358 |
811 |
|
Source: |
|
|
13 |
5211 |
1858 |
819 |
2697 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
2667 |
1532 |
901 |
2808 |
|
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|
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|
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|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
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|
ONECUT1_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
ONECUT1 |
|
1 |
2949 |
1783 |
1677 |
1200 |
|
TF group |
CUT |
|
2 |
3971 |
788 |
1707 |
1143 |
|
Polypeptide used |
full |
|
3 |
7608 |
939 |
1523 |
1658 |
|
Ligand sequence |
TCGCAT20NGA |
|
4 |
7608 |
487 |
130 |
1871 |
|
Batch of SELEX experiment |
AE |
|
5 |
7608 |
0 |
365 |
2 |
|
Seed sequence |
NNAAAATCRATAWN |
|
6 |
7608 |
1 |
3 |
1 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
0 |
2 |
6 |
7608 |
|
SELEX cycle |
3 |
|
8 |
0 |
7608 |
0 |
5 |
|
Number of repeats |
monomeric |
|
9 |
2816 |
0 |
4792 |
2 |
|
Comment |
|
|
10 |
7608 |
0 |
0 |
10 |
|
Representative
matrix |
no |
|
11 |
2 |
3 |
0 |
7608 |
|
|
|
|
12 |
7608 |
132 |
202 |
622 |
|
Source: |
|
|
13 |
4480 |
2837 |
792 |
3128 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
1438 |
1965 |
924 |
3281 |
|
|
|