|
NR4A2_d1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NR4A2 |
1 |
4986 |
5 |
21 |
0 |
|
TF group |
nuclearreceptor |
2 |
18 |
6 |
7056 |
1018 |
|
Polypeptide used |
full |
3 |
60 |
5 |
7657 |
74 |
|
Ligand sequence |
TCATTG20NTTA |
4 |
38 |
180 |
487 |
6924 |
|
Batch of SELEX experiment |
W |
5 |
6 |
5549 |
41 |
339 |
|
Seed sequence |
AGGTCANNNNNTGACCT |
6 |
4761 |
6 |
334 |
12 |
|
Hamming distance of sequences to seed |
2 |
7 |
2540 |
1534 |
572 |
1128 |
|
SELEX cycle |
4 |
8 |
1840 |
1280 |
1670 |
1445 |
|
Number of repeats |
dimeric |
9 |
1453 |
1958 |
1284 |
1521 |
|
Comment |
|
10 |
1118 |
1398 |
1798 |
2221 |
|
Representative matrix |
yes |
11 |
1661 |
780 |
2189 |
1859 |
|
|
|
12 |
35 |
325 |
12 |
6662 |
|
|
|
13 |
502 |
50 |
6657 |
4 |
|
|
|
14 |
4450 |
374 |
150 |
0 |
|
|
|
15 |
74 |
5349 |
0 |
81 |
|
Source: |
|
16 |
1055 |
4540 |
3 |
21 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
17 |
4 |
15 |
0 |
7236 |
|
|
|
|
|
|
|
|
|
|
|
19 |
|
|
|
|
|
|
|
20 |
|
|
|
|
|
|
|
21 |
|
|
|
|
|
|
|
22 |
|
|
|
|
|
|
|
23 |
|
|
|
|
|
|
|
|
NR4A2_d2 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NR4A2 |
1 |
4 |
50 |
10 |
1030 |
|
TF group |
nuclearreceptor |
2 |
38 |
5 |
997 |
1 |
|
Polypeptide used |
full |
3 |
622 |
32 |
35 |
0 |
|
Ligand sequence |
TCATTG20NTTA |
4 |
12 |
743 |
0 |
5 |
|
Batch of SELEX experiment |
W |
5 |
137 |
670 |
0 |
2 |
|
Seed sequence |
TGACCTTTAAAGGTCA |
6 |
0 |
4 |
5 |
940 |
|
Hamming distance of sequences to seed |
2 |
7 |
7 |
4 |
0 |
952 |
|
SELEX cycle |
4 |
8 |
0 |
29 |
0 |
922 |
|
Number of repeats |
dimeric |
9 |
620 |
0 |
33 |
3 |
|
Comment |
|
10 |
645 |
0 |
0 |
10 |
|
Representative matrix |
yes |
11 |
655 |
0 |
2 |
0 |
|
|
|
12 |
8 |
2 |
914 |
179 |
|
|
|
13 |
11 |
0 |
980 |
6 |
|
|
|
14 |
39 |
29 |
42 |
957 |
|
Source: |
|
15 |
0 |
707 |
10 |
50 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
16 |
592 |
4 |
109 |
3 |
|
|
|
|
|
|
|
|
|
|
|
18 |
|
|
|
|
|
|
|
19 |
|
|
|
|
|
|
|
20 |
|
|
|
|
|
|
|
21 |
|
|
|
|
|
|
|
22 |
|
|
|
|
|
|
|
23 |
|
|
|
|
|
|
|
|
NR4A2_m1 |
|
|
|
|||
|
A |
C |
G |
T |
|
Name |
NR4A2 |
1 |
1626 |
1873 |
1684 |
6329 |
|
TF group |
nuclearreceptor |
2 |
775 |
2797 |
1960 |
5661 |
|
Polypeptide used |
full |
3 |
868 |
890 |
835 |
6494 |
|
Ligand sequence |
TCATTG20NTTA |
4 |
7329 |
9 |
297 |
165 |
|
Batch of SELEX experiment |
W |
5 |
7417 |
0 |
19 |
81 |
|
Seed sequence |
TTTAAAGGTCA |
6 |
7388 |
13 |
21 |
2 |
|
Hamming distance of sequences to seed |
2 |
7 |
41 |
99 |
7738 |
909 |
|
SELEX cycle |
4 |
8 |
62 |
113 |
8077 |
91 |
|
Number of repeats |
monomeric |
9 |
67 |
131 |
480 |
7361 |
|
Comment |
|
10 |
18 |
8059 |
56 |
171 |
|
Representative
matrix |
yes |
11 |
7500 |
19 |
394 |
43 |
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |