NR4A2_d1

 

 

 

 

A

C

G

T

 

Name

NR4A2

1

4986

5

21

0

 

TF group

nuclearreceptor

2

18

6

7056

1018

 

Polypeptide used

full

3

60

5

7657

74

 

Ligand sequence

TCATTG20NTTA

4

38

180

487

6924

 

Batch of SELEX experiment

W

5

6

5549

41

339

 

Seed sequence

AGGTCANNNNNTGACCT

6

4761

6

334

12

 

Hamming distance of sequences to seed

2

7

2540

1534

572

1128

 

SELEX cycle

4

8

1840

1280

1670

1445

 

Number of repeats

dimeric

9

1453

1958

1284

1521

 

Comment

 

10

1118

1398

1798

2221

 

Representative matrix

yes

11

1661

780

2189

1859

 

 

 

12

35

325

12

6662

 

 

 

13

502

50

6657

4

 

 

 

14

4450

374

150

0

 

 

 

15

74

5349

0

81

 

Source:

 

16

1055

4540

3

21

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

17

4

15

0

7236

 

 

 

 

 

 

 

 

 

 

 

19

 

 

 

 

 

 

 

20

 

 

 

 

 

 

 

21

 

 

 

 

 

 

 

22

 

 

 

 

 

 

 

23

 

 

 

 

 

 

 

 

NR4A2_d2

 

 

 

 

A

C

G

T

 

Name

NR4A2

1

4

50

10

1030

 

TF group

nuclearreceptor

2

38

5

997

1

 

Polypeptide used

full

3

622

32

35

0

 

Ligand sequence

TCATTG20NTTA

4

12

743

0

5

 

Batch of SELEX experiment

W

5

137

670

0

2

 

Seed sequence

TGACCTTTAAAGGTCA

6

0

4

5

940

 

Hamming distance of sequences to seed

2

7

7

4

0

952

 

SELEX cycle

4

8

0

29

0

922

 

Number of repeats

dimeric

9

620

0

33

3

 

Comment

 

10

645

0

0

10

 

Representative matrix

yes

11

655

0

2

0

 

 

 

12

8

2

914

179

 

 

 

13

11

0

980

6

 

 

 

14

39

29

42

957

 

Source:

 

15

0

707

10

50

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764

16

592

4

109

3

 

 

 

 

 

 

 

 

 

 

 

18

 

 

 

 

 

 

 

19

 

 

 

 

 

 

 

20

 

 

 

 

 

 

 

21

 

 

 

 

 

 

 

22

 

 

 

 

 

 

 

23

 

 

 

 

 

 

 

 

NR4A2_m1

 

 

 

 

A

C

G

T

 

Name

NR4A2

1

1626

1873

1684

6329

 

TF group

nuclearreceptor

2

775

2797

1960

5661

 

Polypeptide used

full

3

868

890

835

6494

 

Ligand sequence

TCATTG20NTTA

4

7329

9

297

165

 

Batch of SELEX experiment

W

5

7417

0

19

81

 

Seed sequence

TTTAAAGGTCA

6

7388

13

21

2

 

Hamming distance of sequences to seed

2

7

41

99

7738

909

 

SELEX cycle

4

8

62

113

8077

91

 

Number of repeats

monomeric

9

67

131

480

7361

 

Comment

 

10

18

8059

56

171

 

Representative matrix

yes

11

7500

19

394

43

 

 

 

 

 

 

 

 

 

Source:

 

 

 

 

 

 

 

Jolma et al., Cell 152:327-339 (2013); PubMed 23332764