|
|
NR2F1_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
NR2F1 |
|
1 |
9659 |
2955 |
13778 |
2233 |
|
TF group |
nuclearreceptor |
|
2 |
14790 |
176 |
13835 |
128 |
|
Polypeptide used |
DBD |
|
3 |
286 |
283 |
28625 |
656 |
|
Ligand sequence |
TCTGAC30NAGG |
|
4 |
350 |
172 |
28625 |
772 |
|
Batch of SELEX experiment |
AI |
|
5 |
195 |
578 |
887 |
28625 |
|
Seed sequence |
NRGGTCANNGGTCAN |
|
6 |
154 |
28625 |
817 |
2088 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
28625 |
117 |
299 |
86 |
|
SELEX cycle |
4 |
|
8 |
25112 |
197 |
2356 |
960 |
|
Number of repeats |
dimeric |
|
9 |
26698 |
83 |
1814 |
30 |
|
Comment |
|
|
10 |
28 |
67 |
28625 |
99 |
|
Representative matrix |
no |
|
11 |
60 |
69 |
28625 |
507 |
|
|
|
|
12 |
30 |
285 |
535 |
28625 |
|
|
|
|
13 |
36 |
28625 |
467 |
1500 |
|
Source: |
|
|
14 |
28625 |
116 |
1790 |
102 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
15 |
10101 |
7248 |
4481 |
6795 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
NR2F1_d2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
NR2F1 |
|
1 |
3577 |
1012 |
4750 |
734 |
|
TF group |
nuclearreceptor |
|
2 |
4397 |
56 |
3930 |
100 |
|
Polypeptide used |
DBD |
|
3 |
100 |
90 |
8327 |
146 |
|
Ligand sequence |
TCTGAC30NAGG |
|
4 |
61 |
27 |
8327 |
206 |
|
Batch of SELEX experiment |
AI |
|
5 |
88 |
90 |
238 |
8327 |
|
Seed sequence |
RRGGTCANNNGGTCAN |
|
6 |
49 |
8327 |
165 |
472 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
8327 |
64 |
479 |
73 |
|
SELEX cycle |
4 |
|
8 |
5738 |
790 |
587 |
1212 |
|
Number of repeats |
dimeric |
|
9 |
4579 |
241 |
2431 |
1076 |
|
Comment |
|
|
10 |
6760 |
33 |
1508 |
26 |
|
Representative matrix |
yes |
|
11 |
28 |
55 |
8327 |
48 |
|
|
|
|
12 |
50 |
37 |
8327 |
164 |
|
|
|
|
13 |
15 |
114 |
195 |
8327 |
|
|
|
|
14 |
46 |
8327 |
144 |
499 |
|
Source: |
|
|
15 |
8327 |
39 |
573 |
64 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
16 |
3077 |
2051 |
1332 |
1867 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
NR2F1_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
NR2F1 |
|
1 |
355 |
105 |
840 |
121 |
|
TF group |
nuclearreceptor |
|
2 |
546 |
0 |
649 |
8 |
|
Polypeptide used |
full |
|
3 |
0 |
3 |
1196 |
11 |
|
Ligand sequence |
TCTGAC20NGA |
|
4 |
2 |
0 |
1196 |
1 |
|
Batch of SELEX experiment |
AE |
|
5 |
0 |
0 |
19 |
1196 |
|
Seed sequence |
RRGGTCAN |
|
6 |
0 |
1196 |
4 |
29 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
1196 |
0 |
56 |
0 |
|
SELEX cycle |
4 |
|
8 |
507 |
207 |
249 |
232 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
NR2F1_m2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
NR2F1 |
|
1 |
4802 |
11446 |
3276 |
3980 |
|
TF group |
nuclearreceptor |
|
2 |
7266 |
1692 |
1153 |
1948 |
|
Polypeptide used |
DBD |
|
3 |
6333 |
387 |
4869 |
469 |
|
Ligand sequence |
TCTGAC30NAGG |
|
4 |
8496 |
0 |
3791 |
0 |
|
Batch of SELEX experiment |
AI |
|
5 |
0 |
30 |
12059 |
0 |
|
Seed sequence |
DNNNGGTCANNNH |
|
6 |
0 |
0 |
12059 |
0 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
0 |
0 |
0 |
12059 |
|
SELEX cycle |
4 |
|
8 |
0 |
12059 |
0 |
0 |
|
Number of repeats |
monomeric |
|
9 |
12059 |
0 |
91 |
0 |
|
Comment |
seed was extended with DNNN and NNNH to exclude
signal from dimeric site |
|
10 |
5116 |
3055 |
1618 |
2270 |
|
Representative matrix |
yes |
|
11 |
3229 |
2966 |
4395 |
1469 |
|
|
|
|
12 |
3276 |
2470 |
3886 |
2427 |
|
Source: |
|
|
13 |
5681 |
2912 |
36863 |
3466 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|