|
|
NR2E1_m1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
NR2E1 |
|
1 |
1118 |
244 |
191 |
401 |
|
TF group |
nuclearreceptor |
|
2 |
1118 |
89 |
448 |
369 |
|
Polypeptide used |
full |
|
3 |
1118 |
1 |
101 |
19 |
|
Ligand sequence |
TAACAA20NACA |
|
4 |
1118 |
0 |
74 |
5 |
|
Batch of SELEX experiment |
W |
|
5 |
40 |
0 |
1118 |
8 |
|
Seed sequence |
AAAAGTCAA |
|
6 |
0 |
58 |
0 |
1118 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
11 |
1118 |
12 |
112 |
|
SELEX cycle |
4 |
|
8 |
1118 |
0 |
0 |
0 |
|
Number of repeats |
monomeric |
|
9 |
1118 |
131 |
117 |
247 |
|
Comment |
|
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
NR2E1_d1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
NR2E1 |
|
1 |
125 |
22 |
31 |
13 |
|
TF group |
nuclearreceptor |
|
2 |
155 |
20 |
38 |
21 |
|
Polypeptide used |
full |
|
3 |
55 |
9 |
155 |
8 |
|
Ligand sequence |
TAACAA20NACA |
|
4 |
0 |
30 |
15 |
155 |
|
Batch of SELEX experiment |
W |
|
5 |
4 |
155 |
10 |
17 |
|
Seed sequence |
RAGTCAANAAGTCA |
|
6 |
155 |
0 |
9 |
0 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
155 |
25 |
25 |
38 |
|
SELEX cycle |
4 |
|
8 |
53 |
9 |
31 |
63 |
|
Number of repeats |
dimeric |
|
9 |
155 |
0 |
6 |
26 |
|
Comment |
|
|
10 |
155 |
8 |
21 |
5 |
|
Representative
matrix |
no |
|
11 |
23 |
4 |
155 |
0 |
|
|
|
|
12 |
5 |
36 |
0 |
155 |
|
Source: |
|
|
13 |
0 |
155 |
9 |
29 |
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
155 |
0 |
17 |
0 |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Nr2e1_m2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Nr2e1 |
|
1 |
1615 |
312 |
293 |
557 |
|
TF group |
nuclearreceptor |
|
2 |
1615 |
180 |
572 |
666 |
|
Polypeptide used |
DBD |
|
3 |
1615 |
17 |
108 |
13 |
|
Ligand sequence |
TCGCGC20NGCT |
|
4 |
1615 |
7 |
120 |
0 |
|
Batch of SELEX experiment |
AA |
|
5 |
9 |
17 |
1615 |
2 |
|
Seed sequence |
AAAAGTCAA |
|
6 |
3 |
107 |
26 |
1615 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
19 |
1615 |
0 |
41 |
|
SELEX cycle |
4 |
|
8 |
1615 |
11 |
49 |
3 |
|
Number of repeats |
monomeric |
|
9 |
1615 |
248 |
213 |
427 |
|
Comment |
|
|
|
|
|
|
|
|
Representative matrix |
yes |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
Nr2e1_d2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
Nr2e1 |
|
1 |
1537 |
181 |
659 |
51 |
|
TF group |
nuclearreceptor |
|
2 |
1753 |
262 |
545 |
267 |
|
Polypeptide used |
DBD |
|
3 |
262 |
16 |
3361 |
25 |
|
Ligand sequence |
TCGCGC20NGCT |
|
4 |
26 |
177 |
174 |
2564 |
|
Batch of SELEX experiment |
AA |
|
5 |
0 |
2564 |
39 |
241 |
|
Seed sequence |
RAGTCAANAAGTCA |
|
6 |
2046 |
11 |
194 |
41 |
|
Hamming distance of sequences to seed |
2 |
|
7 |
1771 |
250 |
313 |
432 |
|
SELEX cycle |
4 |
|
8 |
801 |
160 |
647 |
969 |
|
Number of repeats |
dimeric |
|
9 |
2072 |
22 |
65 |
112 |
|
Comment |
|
|
10 |
2066 |
70 |
135 |
63 |
|
Representative matrix |
yes |
|
11 |
24 |
1 |
3479 |
3 |
|
|
|
|
12 |
0 |
351 |
82 |
2432 |
|
Source: |
|
|
13 |
7 |
2542 |
71 |
248 |
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
14 |
2111 |
24 |
223 |
18 |
|
|
|