|
|
NKX6-2_1 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
NKX6-2 |
|
1 |
3169 |
6240 |
5282 |
3572 |
|
TF group |
homeodomain |
|
2 |
756 |
7172 |
551 |
11090 |
|
Polypeptide used |
DBD |
|
3 |
10629 |
7633 |
906 |
2470 |
|
Ligand sequence |
TTACAT20NTA |
|
4 |
18262 |
198 |
0 |
124 |
|
Batch of SELEX experiment |
AF |
|
5 |
316 |
0 |
0 |
18262 |
|
Seed sequence |
NYMATTAN |
|
6 |
1908 |
2026 |
467 |
18262 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
18262 |
180 |
547 |
142 |
|
SELEX cycle |
3 |
|
8 |
9540 |
3567 |
1672 |
3483 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
|
Representative matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et al., Cell 152:327-339 (2013); PubMed 23332764 |
|
|
|
|
|
|
|
|
|
|
|
|
NKX6-2_2 |
|
|
|
|||
|
|
A |
C |
G |
T |
|
Name |
NKX6-2 |
|
1 |
3761 |
6072 |
5228 |
3874 |
|
TF group |
homeodomain |
|
2 |
1172 |
7831 |
814 |
11104 |
|
Polypeptide used |
full |
|
3 |
11354 |
7581 |
1053 |
2582 |
|
Ligand sequence |
TGGCAA20NGA |
|
4 |
18935 |
310 |
191 |
546 |
|
Batch of SELEX experiment |
AE |
|
5 |
584 |
0 |
0 |
18935 |
|
Seed sequence |
NYMATTAN |
|
6 |
2468 |
2233 |
551 |
18935 |
|
Hamming distance of sequences to seed |
1 |
|
7 |
18935 |
370 |
775 |
678 |
|
SELEX cycle |
3 |
|
8 |
9971 |
3457 |
1660 |
3846 |
|
Number of repeats |
monomeric |
|
|
|
|
|
|
|
Comment |
|
|
|
|
|
|
|
|
Representative
matrix |
no |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Source: |
|
|
|
|
|
|
|
|
Jolma et
al., Cell 152:327-339 (2013); PubMed 23332764 |
|